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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gctagtgtcactgatgctcataatagtgacttcctttgctcccaagcatccttattcggcaacattgttgaaactcttgccctattctttttttacagCTTACGTTTACTGCTCTCCATTTGCTTAGTTTTGTGTCACCAAACGACGATCCAAGCCTGAAAGATTTTCTTACCAAG

Basic information

species Zea mays
transcript GRMZM2G446895_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G446895_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g05670.1 (Oryza sativa), 3'ss of exon 13
----------------------gctagtgtcactgatgctcataatagtgacttcctttgc-------tcccaagcatccttattcggcaacattgttgaaactcttgccctattctttttttacagCTTACGTTTACTGCTCTCCATTTGCTTAGTTTTGTGTCACCAAACGACGATCCAAGCCTGAAAGATTTTCTTACCAAG
                        |||  |      |   ||| | ||   |||  |||           |  ||||||  |||| |||| || ||||||| || ||||||     || |||||||| |||| ||||||||||| |||||| |||||||||| |||||||| || |||| |||||||| ||||||||||| ||||
gttagtgtttctgtagtgcttatatagacttttctttttgcatcaaagcagctttatttttgtaccagctcagagcatctatatttggcagcactgttgaagcttttgcccc---tttattttacagGTTACATTTACTGCTCTTCATTTGTTTAGTTTTGTTTCACCAAAAGATGATCAAAGCCTGAGAGATTTTCTTATCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28986001|gb|CB350921.1|CB350921
EST:     ATTCATCGTTACCTTCAAATTTCAAACAGAGAGACAACCTCGAGAAGCAG                         CTTACGTTTACTGCTCTCCATTTGCTTAGTTTTGTGTCACCAAACGACGAT
genomic: ATTCATCGTTACCTTCAAATTTCAAACAGAGAGACAACCTCGAGAAGCAGgctagtgtca ... ttttttacagCTTACGTTTACTGCTCTCCATTTGCTTAGTTTTGTGTCACCAAACGACGAT
EST: gi|18174510|gb|BM349898.1|BM349898
EST:     ATTCATCGTTACCTTCAGATTTCAAACAGAGAGACAACCTCGAGAAGCAG                         CTTACGTTTACTGCTCTCCATTTGCTTAGTTTTGTGTCACCAAACGACGAT
genomic: ATTCATCGTTACCTTCAAATTTCAAACAGAGAGACAACCTCGAGAAGCAGgctagtgtca ... ttttttacagCTTACGTTTACTGCTCTCCATTTGCTTAGTTTTGTGTCACCAAACGACGAT
EST: gi|160481627|gb|EY254459.1|EY254459
EST:     ATTCATCGTTACCTTCAAATTTCAAACAGAGAGACAACCTCGAGAAGCAG                         CTTACGTTTACTGCTCTCCATTTGCTTAGTTTTGTGTCACCAAACGACGAT
genomic: ATTCATCGTTACCTTCAAATTTCAAACAGAGAGACAACCTCGAGAAGCAGgctagtgtca ... ttttttacagCTTACGTTTACTGCTCTCCATTTGCTTAGTTTTGTGTCACCAAACGACGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcatccttattcggcaacattgttgaaactcttgccctattctttttttacagCTTACGTTTACTGCTCTCCATTTGCTTAGTTTTGTGTCACCAAACGACGATCCAAGCCTGAAAGATTTTCTTACCAAG
                              ctcttgccctattctt  CT-rich tract
                                       tattctttttttaca  TA-rich tract