1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgtataatgcatacatggttgacaaatgttttaaatttctttgttgatgtatcagctattttcttgtcagatgttcattctacaatcttctatgagcagATTAGTGAACTGAAAGCTGCTCTTGGGACTTTGTCTGCCCGTGGCGAGAAGTACTGCAGTGAAGCATGCTTGAGAAGATATCTGGAAGCCCGTAACTGGA
species | Zea mays |
transcript | GRMZM2G443453_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCATGGCGCTGATGTCAACTCAGATGATGCTGAGCAAAGAGAAGCAAAG ATTAGTGAACTGAAAGCTGCTCTTGGGACTTTGTCTGCCCGTGGCGAGAAGEST: gi|89761846|gb|DY689697.1|DY689697
genomic: AGCATGGCGCTGATGTCAACTCAGATGATGCTGAGCAAAGAGAAGCAAAGgtaagtttaa ... ctatgagcagATTAGTGAACTGAAAGCTGCTCTTGGGACTTTGTCTGCCCGTGGCGAGAAG
EST: AGCATGGCGCTGATGTCAACTCAGATGATGCTGAGCAAAGAGAAGCAAAG ATTAGTGAACTGAAAGCTGCTCTTGGGACTTTGTCTGCCCGTGGCGAGAAG
genomic: AGCATGGCGCTGATGTCAACTCAGATGATGCTGAGCAAAGAGAAGCAAAGgtaagtttaa ... ctatgagcagATTAGTGAACTGAAAGCTGCTCTTGGGACTTTGTCTGCCCGTGGCGAGAAG
tgatgtatcagctattttcttgtcagatgttcattctacaatcttctatgagcagATTAGTGAACTGAAAGCTGCTCTTGGGACTTTGTCTGCCCGTGGCGAGAAGTACTGCAGTGAAGCATGCTTGAGAAGATATCTGGAAGCCCGTAACTGGA
tgttgat putative branch site (score: 4)
tcttctat putative PPT
tattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtataatgcatacatggttgacaaatgttttaaatttctttgttgatgtatcagctattttcttgtcagatgttcattctacaatcttctatgagcagATTAGTGAACTGAAAGCTGCTCTTGGGACTTTGTCTGCCCGTGGCGAGAAGTACTGCAGTGAAGCATGCTTGAGAAGATATCTGGAAGCCCGTAACTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG