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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggactccaatcttggcctttgtttttgtgtttatttttgcctagcatgttatttattttcaaagtcttgatgattagGTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAA

Basic information

species Zea mays
transcript GRMZM2G442404_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G442404_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g15594.1 (Oryza sativa), 3'ss of exon 2
gtatggactccaatcttggcctttgtttttgtgtttatttttgcctagcatgttatttattttcaaagtcttgatgattagGTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAA
||||||  |||| ||||  | | | |  ||  ||   |   |||| | |||||| ||| |||| ||  | | |   |||||||||||| ||| ||||||||||||||||||||| |||  | ||||| || || ||||| || |||||||| ||| |||| |||||||||||||| ||||
gtatggtttcca-tctttccttgtctactttcgtgattccgtgcccaccatgtt-tttcttttgaagatttggtgcattagGTCATGGAGGACCACGTGCTGCTGAGTATTTGAAGGAAAATTTGTTCGAAAATCTTCTGAAACACCCTGAGTTCCTGACAGATACAAAGCTTGCCATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78179208|gb|DV549581.1|DV549581
EST:     ACTAACTGAAATTGATGGACAAGCTATTAGCCTGTTTGGTGTTTTTGACG                         GTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGA
genomic: ACTAACTGAAATTGATGGACAAGCTATTAGCCTGTTCGGTGTTTTTGACGgtatggactc ... tgatgattagGTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGA
EST: gi|8103065|gb|AW927729.1|AW927729
EST:     CTAACTGAAATTGATGGACAAGCTATTAGCCTGTTTGGTGTGTTTTGACG                         GTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAG
genomic: CTAACTGAAATTGATGGACAAGCTATTAGCCTGTTCGGTGT-TTTTGACGgtatggactc ... tgatgattagGTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAG
EST: gi|32931838|gb|CF036650.1|CF036650
EST:     ACTAACTGAAATTGATGGACAAGCTATTAGCCTGTTCGGTGTTTTTGACG                         GTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGA
genomic: ACTAACTGAAATTGATGGACAAGCTATTAGCCTGTTCGGTGTTTTTGACGgtatggactc ... tgatgattagGTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtgtttatttttgcctagcatgttatttattttcaaagtcttgatgattagGTCATGGTGGATCACGTGCTGCTGAGTATTTGAGGGAGCACTTGTTTGAGAACCTTCTCAAGCACCCTGATTTCTTGACGGATACAAAGCTTGCTATAA
                                          tcttgat  putative branch site (score: 4)
                       atgttatttattttca  TA-rich tract