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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcaaaacatcagctgtatttcataaattgtttcacttccattgtattgtactaccttttctgttcatttatttgggatgtgtcatcttcagGTTGGGCTCCAAAGTTGCAATGTTCCAGTATTCCTCAGTCGAAATTTACAATGGCTGCAAACCACAGCCTACTCTTGAGATTCACAATCCTGATATGCAC

Basic information

species Zea mays
transcript GRMZM2G441397_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G441397_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g59540.1 (Oryza sativa), 3'ss of exon 4
---gtaagctcaaaacatcagctgtatttcataaattgtttcacttccattgtattgtactaccttttctgttcatttatttgggatg-tgtcatcttcagGTTGGGCTCCAAAGTTGCAATGTTCCAGTATTCCTCAGTCGAAATTTACAATGGCTGCAAACCACAGCCTACTCTTGAGATTCACAATCCTGATATGCAC
   |  | |  | |  |  |  || |  |  || ||   |  || ||| ||      |  |   || | | ||| ||| || |  |   ||    |||||||||||| ||||||||||||| |||||| ||||| ||||| |||||||||| || ||||||||| || |  || |||||| |||||||||| |||||||  
aacggcatcatacattaaaatatggaggtagtacat-actaaacatcctttagcccttctttatttctttcttcttttgttggaaaaaatggtgacttcagGTTGGGTTCCAAAGTTGCAAAGTTCCAATATTCATCAGTTGAAATTTACACTGCCTGCAAACCGCAACGAACCCTTGAGTTTCACAATCCCGATATGCGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccattgtattgtactaccttttctgttcatttatttgggatgtgtcatcttcagGTTGGGCTCCAAAGTTGCAATGTTCCAGTATTCCTCAGTCGAAATTTACAATGGCTGCAAACCACAGCCTACTCTTGAGATTCACAATCCTGATATGCAC
                                             tcatcttc  CT-rich tract
                          ttcatttattt  TA-rich tract