Sequence
atgc intronic sequence ATGC exonic sequence...ttatgttgtagtatcttctccttcctcgctaagatcttccactgtttaaacaacccagaagcctcgctgacgacgttgtggtgtgtcgttttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAGGACCTGGTGCTCCAGCAACCCTACACCAAGGAAAGGTACGGCTCGGCGC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16918156|gb|BM073606.1|BM073606EST: TCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAG GACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAG
genomic: TCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAGgtacgtcgtc ... ttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAG
EST:
gi|18655059|gb|BM499864.1|BM499864EST: TCGGGCCCGGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAG GACGGGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGGGGAG
genomic: TCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAGgtacgtcgtc ... ttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAG
EST:
gi|19272526|gb|BM888782.1|BM888782EST: TCGGGCCCCTGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAG GACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAG
genomic: TCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAGgtacgtcgtc ... ttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAG
EST:
gi|19351354|gb|BM895886.1|BM895886EST: TCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAG GACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAG
genomic: TCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAGgtacgtcgtc ... ttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAG
EST:
gi|22490250|gb|BU050173.1|BU050173EST: TCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAG GACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTC
genomic: TCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAGgtacgtcgtc ... ttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTC
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 3 RNA-Seq libraries.
Block sizes:
20 (upstream exon),
46 (downstream exon)
Score:
3AGAGTTGAAACCCCAGGACGGCGAAGGCAAGCTCCCCACCTCTATGCTGTTCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAGgtacgtcgtc ... ttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAGGACCTGGTGCTCCAGCAACCCTACACCAAGGAAAGGTACGGCTCGGCGC
Block sizes:
45 (upstream exon),
46 (downstream exon)
Score:
29AGAGTTGAAACCCCAGGACGGCGAAGGCAAGCTCCCCACCTCTATGCTGTTCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAGgtacgtcgtc ... ttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAGGACCTGGTGCTCCAGCAACCCTACACCAAGGAAAGGTACGGCTCGGCGC
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
60AGAGTTGAAACCCCAGGACGGCGAAGGCAAGCTCCCCACCTCTATGCTGTTCGGGCCCCGGATCATCCGAGAGAAGTTCACCCAGCTCTGCTCGCCCGAGgtacgtcgtc ... ttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAGGACCTGGTGCTCCAGCAACCCTACACCAAGGAAAGGTACGGCTCGGCGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaaacaacccagaagcctcgctgacgacgttgtggtgtgtcgttttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAGGACCTGGTGCTCCAGCAACCCTACACCAAGGAAAGGTACGGCTCGGCGC
cgctgac putative branch site (score: 60)
tcgtttt putative PPT
ttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatgttgtagtatcttctccttcctcgctaagatcttccactgtttaaacaacccagaagcctcgctgacgacgttgtggtgtgtcgttttatcggcagGACGTGACCCTCATGACATCTCTGCTTCGGCCGAGTTCCATGTTCGTGGAGGACCTGGTGCTCCAGCAACCCTACACCAAGGAAAGGTACGGCTCGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -tgttgta
- - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - ccactgt
- - - - - - - - - - - - - - - - - - - - - - - - aacaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggtg