1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatttaactcaatttgatgatgatgcaaccttccacaacgctttcaacatggacatgaacttgcaggcatctgaaaataatacttatcctccaacttaagGAACCAAACTTAAGAAAGCAGTGACAAGAAGACTTGCAAACTACAGCCAGGCTGAGGATGAGGTCCTTGTGTCGGCTTACCTAAACGTCTCCAAAGATCC
species | Zea mays |
transcript | GRMZM2G438841_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
aacatggacatgaacttgcaggcatctgaaaataatacttatcctccaacttaagGAACCAAACTTAAGAAAGCAGTGACAAGAAGACTTGCAAACTACAGCCAGGCTGAGGATGAGGTCCTTGTGTCGGCTTACCTAAACGTCTCCAAAGATCC
cttatcctcc CT-rich tract
tgaaaataatacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttaactcaatttgatgatgatgcaaccttccacaacgctttcaacatggacatgaacttgcaggcatctgaaaataatacttatcctccaacttaagGAACCAAACTTAAGAAAGCAGTGACAAGAAGACTTGCAAACTACAGCCAGGCTGAGGATGAGGTCCTTGTGTCGGCTTACCTAAACGTCTCCAAAGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - -aactcaa
- - - - - - - tgatgat
- - - - - - - - - - - - - - - - ccacaac
- - - - - - - - - - - - - - - - - - - - - - - acatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa