1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagcttcctgtgccatgccgccttccgcttcttgaccacagcaccggctccgtgccggcagcatcggtccgtttgctgatgtgatgttttgggtccttttttcccccctttcgcttggggactggtgtcgctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACACGCTGCTGCAGTCCCTCTTCGGGACCCGGCTGCCGACGGTCATCGGCG
species | Zea mays |
transcript | GRMZM2G437859_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCCGCGACCAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|50339069|gb|CO534195.1|CO534195
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCATGACGGGGATAAACEST: gi|74244049|gb|DT651963.1|DT651963
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|149001123|gb|EE038382.2|EE038382
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|78084450|gb|DV512843.1|DV512843
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|211102812|gb|FL069930.1|FL069930
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAAACGCTGCTGTTCGTGAEST: gi|211100342|gb|FL069923.1|FL069923
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGA
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGGTGGTGCAGACGCTGCTGTTCGTGACGGEST: gi|71439895|gb|DR820945.1|DR820945
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGG-TGGTGCAGACGCTGCTGTTCGTGACGG
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|74243489|gb|DT651403.1|DT651403
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|149071736|gb|EE160129.2|EE160129
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|211102808|gb|FL069926.1|FL069926
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAA-CEST: gi|71431026|gb|DR812076.1|DR812076
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|76923378|gb|DV169457.1|DV169457
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|74238882|gb|DT646796.1|DT646796
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|74240437|gb|DT648351.1|DT648351
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|91049745|gb|EB160163.1|EB160163
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|71449525|gb|DR830575.1|DR830575
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|211102809|gb|FL069927.1|FL069927
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|50331687|gb|CO526813.1|CO526813
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|211100336|gb|FL069917.1|FL069917
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGEST: gi|71310987|gb|DR791795.1|DR791795
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAG
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACEST: gi|211100341|gb|FL069922.1|FL069922
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGGTCAGGGTGGTGCAGACGCTGCCTGTTCGTGGACGGGGGATEST: gi|71438783|gb|DR819833.1|DR819833
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGG-TCAGGGTGGTGCAGACGCTGC-TGTTCGTG-ACGGGG-AT
EST: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGAT GGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
genomic: CGGCGGTGATGATCCCGACAGTGTTGGTTCCCATGATGGGCGGCGACGATgtgagcttcc ... ctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAAC
gttttgggtccttttttcccccctttcgcttggggactggtgtcgctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACACGCTGCTGCAGTCCCTCTTCGGGACCCGGCTGCCGACGGTCATCGGCG
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttcctgtgccatgccgccttccgcttcttgaccacagcaccggctccgtgccggcagcatcggtccgtttgctgatgtgatgttttgggtccttttttcccccctttcgcttggggactggtgtcgctgtttgcagGGGGACAGGGTCAGGGTGGTGCAGACGCTGCTGTTCGTGACGGGGATAAACACGCTGCTGCAGTCCCTCTTCGGGACCCGGCTGCCGACGGTCATCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG