1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacggccattggctacgagagagaggtcccttctcgtgggcttgggttactgactctgtttggtgtggcgtgcagGACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACACGGCACGGAGTGGAAGTTCCGGCATATCTATCGAG
species | Zea mays |
transcript | GRMZM2G437460_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GNGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTG GACTACAGCCAGCAGAGGNCGTCTCAGGAGCTCGTGGNCAAGGATCTACACEST: gi|211024420|gb|FL142653.1|FL142653
genomic: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGgtacggccat ... tggcgtgcagGACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACAC
EST: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTG GACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACACEST: gi|211071382|gb|FL173062.1|FL173062
genomic: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGgtacggccat ... tggcgtgcagGACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACAC
EST: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTG GACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACACEST: gi|211071379|gb|FL173059.1|FL173059
genomic: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGgtacggccat ... tggcgtgcagGACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACAC
EST: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTG GACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACACEST: gi|211071380|gb|FL173060.1|FL173060
genomic: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGgtacggccat ... tggcgtgcagGACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACAC
EST: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTG GACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACACEST: gi|211024423|gb|FL142656.1|FL142656
genomic: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGgtacggccat ... tggcgtgcagGACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACAC
EST: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTG GACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACACEST: gi|211071384|gb|FL173064.1|FL173064
genomic: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGgtacggccat ... tggcgtgcagGACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACAC
EST: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTG GACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACAC
genomic: GCGGTTTCTCAGTGCCGCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGgtacggccat ... tggcgtgcagGACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACAC
gagaggtcccttctcgtgggcttgggttactgactctgtttggtgtggcgtgcagGACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACACGGCACGGAGTGGAAGTTCCGGCATATCTATCGAG
tactgac putative branch site (score: 6)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggccattggctacgagagagaggtcccttctcgtgggcttgggttactgactctgtttggtgtggcgtgcagGACTACAGCCAGCAGAGGCCGTCTCAGGAGCTCGTGGCCAAGGATCTACACGGCACGGAGTGGAAGTTCCGGCATATCTATCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG