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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagaagctataaatctatgattttggttctttttgaaactggaacatgtactgagtaatgtgttccattttttgtgtgtgctggcaactcattctaatccctttaatcacccttatctttttttttggtgaacagCTCTGGAAGAGGTTTAGGGGGGAAGACAAGCCACCGGCACATCTAGGTGCAAGCAGAGATTACAATGTAGACATGGTTCCAAAG

Basic information

species Zea mays
transcript GRMZM2G435373_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G435373_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 3'ss of exon 2
------------------------------gcaagaagctataaatctatgattttggttctttttgaaactggaacatgt-actgagtaatgtgttccattttttgtgtgtgctggcaactcattctaatccctttaatcacccttatctttttttttggtgaacagCTCTGGAAGAGGTTTAGGGGGGAAGACAAGCCACCGGCACATCTAGGTGCAAGCAGAGATTACAATGTAGACATGGTTCCAAAG
                                 ||| | |  | ||    |   ||  |||||    |     |   |||| | |  | | |   ||  ||  ||||  |        | ||   | |  |  ||   ||     ||   ||   ||||||   | |||| |||||||||||||| ||||||||||| || || || ||||| |||||||||||||||||||||||||| ||||| ||||||
gtaagcaactccaatgaactaaatttgaatagtagaggtttcatattcgcgtgcttatttcttgcgaagggatgcttatgttattacggagtacattatatcctttgattaattc--tatctttgtttgtttactgacattggttttgaattcgcttttggatta-agCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAAGCAGAGATTACAATGTAGATATGGTCCCAAAG

upper sequence: GRMZM2G435373_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 3'ss of exon 2
-----------gcaagaagctataaatctatgattttggttctttttgaaactggaacat-gtactgagtaatg--tgttccatttt--------ttgtgtgtgctggcaactcattctaatcccttta-atcacccttatctttttttttggtgaacagCTCTGGAAGAGGTTTAGGGGGGAAGACAAGCCACCGGCACATCTAGGTGCAAGCAGAGATTACAATGTAGACATGGTTCCAAAG
           ||||  | ||  |  |      |   || ||| | |      |  | ||  |    || ||||  | |   |||          || | | |  |      |  | ||  | |  | | ||     |   |||   |||| | ||| |||| |||||||||||||| ||||||||||| || ||||| ||||| ||  |||||| ||||||||||||||| ||||| ||||||
gtaagcaaactgcaatgaacttaatttgaccagtacagggtctatatcttgtcgtcatatcatgtcaaggaatgcttatgttattacagagtacattatttcttttaattttttgtccttgttcactgacattgttttccacttcgctttttg-gaatagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCGGCTCATCTGGGCTCAAGCAAAGATTACAATGTAGATATGGTCCCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32850140|gb|CD989821.1|CD989821
EST:     ATAGAAATGATTACTACGGAGGAGATTCCACCTCCCTAAACCTGAACCAG                         CTCTGGAAGAGGTTTAGGGGGGAAGACAAGCCACCGGCACATCTAGGTGCA
genomic: ATAGAAATGATTACTACGGAGGAGATTCCACCTCCCTAAACCTGAACCAGgcaagaagct ... tggtgaacagCTCTGGAAGAGGTTTAGGGGGGAAGACAAGCCACCGGCACATCTAGGTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggcaactcattctaatccctttaatcacccttatctttttttttggtgaacagCTCTGGAAGAGGTTTAGGGGGGAAGACAAGCCACCGGCACATCTAGGTGCAAGCAGAGATTACAATGTAGACATGGTTCCAAAG
                 tccctttaatcaccct  CT-rich tract
                                ttatcttttttttt  TA-rich tract