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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatgtcgtctgctgctagttcctttcctttcctttcctgtctaatttgtcatgctcatgcatggtgacccatgcagATATTGCTAAGGGGAGCAAATACTCAAGAACTGAAGAAAATCAAGCAGGTCATGAACTACACAGTGTTTGCAGCGTACCGCCTCGTTCTTGAGACATCCT

Basic information

species Zea mays
transcript GRMZM2G428386_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G428386_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g59540.1 (Oryza sativa), 3'ss of exon 2
gtatgcatgtcgtctgctgct--agttcctttcctttcctttcctgtctaatttg--tcatgctcatgcatggtgacccatgcagATATTGCTAAGGGGAGCAAATACTCAAGAACTGAAGAAAATCAAGCAGGTCATGAACTACACAGTGTTTGCAGCGTACCGCCTCGTTCTTGAGACATCCT
||| ||| || | || | ||| || || ||| || | || | || |||| | | | |||||||||| |||| || || |||| || ||||||||||||||||||||||| ||| || |||||||| | || || || |||| || ||| ||||||||||||
gtaagcactcgatcaaatactccatttcattcaattacctagatcaattactctgcattattctca-atacgcgcgcgcatgcagATACTGCTCAGAGGCGCAAGCACCCAAGAACTGAAGAAAATCAAGCAAGTCTTGCACTACACAATATTCGCTGCATACCATCTGGTTGTTGAGACATCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcctttcctttcctgtctaatttgtcatgctcatgcatggtgacccatgcagATATTGCTAAGGGGAGCAAATACTCAAGAACTGAAGAAAATCAAGCAGGTCATGAACTACACAGTGTTTGCAGCGTACCGCCTCGTTCTTGAGACATCCT
                 gtctaat  putative branch site (score: 3)
 tctaattt  TA-rich tract