1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tttccaagccttccatctctccgtggactcgctgcaggactaggatcgaaggcattccataactcaaaagttgtttacacctgtagtttgctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG
species | Zea mays |
transcript | GRMZM2G426275_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTCCGCCTCCTCCTCCTCGCTGCAGCTGCAGCTTTCATCTACATCCAA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAEST: gi|89762572|gb|DY690099.1|DY690099
genomic: ACCTCCGCCTCCTCCTCCTCGCTGCAGCTGCAGCTTTCATCTACATCCAAgtatggaagc ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
EST: ACCTCCGCCTCCTCCTCCTCGCTGCAGCTGCAGCTTTCATCTACATCCAA GAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
genomic: ACCTCCGCCTCCTCCTCCTCGCTGCAGCTGCAGCTTTCATCTACATCCAAgtatggaagc ... ctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAA
tcgaaggcattccataactcaaaagttgtttacacctgtagtttgctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG
ccataac putative branch site (score: 12)
tttgctcc putative PPT
aaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttccaagccttccatctctccgtggactcgctgcaggactaggatcgaaggcattccataactcaaaagttgtttacacctgtagtttgctccatacagGAAAGATCTGAAAATCAATGCACCAGTCAATTAAAGTCCTTGATCGATCAAGTCAGCATGCAGCAGGAGAAGATTGTAGCATTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- -ccaagcc
- - - - - - - - - - - - - - - gctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - -gcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacctgt