1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaattttgcagttttgtggtctttacataacactataaactaggaatggatgatctctatctgtggtttatggtccatcttctttatgatggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCCTTCGTGAGGTTCGTGGCATTGGGGATTACACAGCTGGAGCAATCGCTT
species | Zea mays |
transcript | GRMZM2G425986_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|71323508|gb|DR798415.1|DR798415
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|71299540|gb|DR785778.1|DR785778
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|50329302|gb|CO524428.1|CO524428
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|91874808|gb|EB404765.1|EB404765
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|211280029|gb|FL236952.1|FL236952
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTARGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTEST: gi|76285023|gb|DV024591.1|DV024591
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTT
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|71441857|gb|DR822907.1|DR822907
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|78090907|gb|DV519281.1|DV519281
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|76926659|gb|DV170957.1|DV170957
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|71323967|gb|DR798666.1|DR798666
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|78103468|gb|DV521896.1|DV521896
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|74245470|gb|DT653384.1|DT653384
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|76920658|gb|DV168270.1|DV168270
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|71446168|gb|DR827218.1|DR827218
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|211281830|gb|FL236960.1|FL236960
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|94478908|gb|EB707866.1|EB707866
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGEST: gi|211280023|gb|FL236946.1|FL236946
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTG
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCEST: gi|6865197|gb|AW360547.1|AW360547
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGGTGTTTCCTCGCACAGCATTAGCCEST: gi|211280026|gb|FL236949.1|FL236949
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCA-ATCATCNGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCEST: gi|211280024|gb|FL236947.1|FL236947
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATC-GAAAAGGGGTTGTTTCCTTGCACGGCGTTAGC
EST: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAG GGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
genomic: AGATGTGGGCGGGTCTTGGCTACTACCGTAGGGCTCGATTTCTGCTGGAGgtgagttgtg ... ggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCC
atggatgatctctatctgtggtttatggtccatcttctttatgatggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCCTTCGTGAGGTTCGTGGCATTGGGGATTACACAGCTGGAGCAATCGCTT
ttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattttgcagttttgtggtctttacataacactataaactaggaatggatgatctctatctgtggtttatggtccatcttctttatgatggagaaacagGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCCTTCGTGAGGTTCGTGGCATTGGGGATTACACAGCTGGAGCAATCGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA