1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacatgtgcaatccatgcaacttgtgttctccttgtctattcacgctcacgttcttgaagcgtgaagtgctagtttctgcccctctagttcgttgttttggctctttaataaagtttctcatggaatgtggttattgtcttgttctttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
species | Zea mays |
transcript | GRMZM2G422938_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCACEST: gi|149089899|gb|EE179185.2|EE179185
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGEST: gi|148947022|gb|EC892319.2|EC892319
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGEST: gi|211338713|gb|FL158147.1|FL158147
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGEST: gi|47962573|gb|CN845282.1|CN845282
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGEST: gi|93014248|gb|EB639768.1|EB639768
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCCTCAAGAATGGAAGGGAAATCCCATTTCAGEST: gi|89761789|gb|DY689662.1|DY689662
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGEST: gi|91051790|gb|EB162208.1|EB162208
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGEST: gi|211372983|gb|FL340766.1|FL340766
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGEST: gi|31612368|gb|CD568990.1|CD568990
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGEST: gi|50331881|gb|CO527007.1|CO527007
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAGEST: gi|18166002|gb|BM335841.1|BM335841
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
EST: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACG ATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
genomic: ATTTCGGGTGATAAATCCGACGAACAGACAGCACGCGACGgtacatgtgc ... ttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
ctctttaataaagtttctcatggaatgtggttattgtcttgttctttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
ctttaat putative branch site (score: 4)
ttattgtcttgttctt putative PPT
ttgttcttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatgtgcaatccatgcaacttgtgttctccttgtctattcacgctcacgttcttgaagcgtgaagtgctagtttctgcccctctagttcgttgttttggctctttaataaagtttctcatggaatgtggttattgtcttgttctttttttacagATGGAATCATCAAGAATGGAAGGGAAATCCTATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG