1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcgtttgaagttattatcctgagaaatcttctttacgttatactaattagcacattgtttccaaagacatctgacatacacagtgtttttacttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG
species | Zea mays |
transcript | GRMZM2G422581_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCEST: gi|211184106|gb|FL465367.1|FL465367
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCEST: gi|211135586|gb|FL028680.1|FL028680
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCEST: gi|88751068|gb|DY535209.1|DY535209
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: TGGCCAAAACCTATCCTGGCCGCTTTAAGATTTACTATGTGTTGAATCAG CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCEST: gi|50331967|gb|CO527093.1|CO527093
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAG CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCEST: gi|78117349|gb|DV535736.1|DV535736
genomic: TGGCCAAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: GGCCAAAAACCTATCCTGGCCGCTTTAAGATTTACTATGTGTTGAATCAG CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCEST: gi|19769752|gb|BQ034473.1|BQ034473
genomic: GGCC-AAAACCTATCCTGGCCGCTTTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
EST: TTAAGATCTACTATGTGTTGAATCAG CCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
genomic: TTAAGATCTACTATGTGTTGAATCAGgtttgtgtca ... acttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATC
attagcacattgtttccaaagacatctgacatacacagtgtttttacttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG
tttttactt CT-rich tract
tttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtttgaagttattatcctgagaaatcttctttacgttatactaattagcacattgtttccaaagacatctgacatacacagtgtttttacttgtgcagCCTCCTGAGAACTGGAACGGTGGTGTTGGGTTTGTGTCTAAGGAAATGATCCAATCTCATTGTCCAGCGCCTGCTGAGGACATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttt