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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttatcttcatgcttgtgtcttggttgcatggttgtaccagtaggcctggttcccttctttttacgccgtgtaatcttccttcgactcattcttttgcagGACCTGCACGACTGTTTCTTGGTCATTTCGAATTTTCTATGAGAAG

Basic information

species Zea mays
transcript GRMZM2G421899_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421899_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g48370.2 (Oryza sativa), 3'ss of exon 3
cttatcttcatgcttgtgtcttggttgcatggttgtaccagtaggcctggttcccttctttttacgccgtgtaatcttccttcgactcattcttttgcagGACCTGCACGACTGTTTCTTGGTCATTTCGAATTTTCTATGAGAAG
         | || | |   ||      |   |  ||   | ||            | |   || |  | ||||| |      | |  | || |||||||||| ||||| ||||| || ||||| || ||||||||||||||||||
-------gtaagcctctaattttcacagaacatgttattcgcagaaaaaaaaagact-tccatatgt-gagtaatttgttgctgccgtaatcctttgcagGACGTGCACTACTGTATCGTGGTCGTTCCGAATTTTCTATGAGAAG

upper sequence: GRMZM2G421899_T03 (Zea mays), 3'ss of exon 2
lower sequence: PP1S131_109V6.1 (Physcomitrella patens), 3'ss of exon 4
cttatcttcatgcttgtgtcttggttgcatggttgtaccagtaggcctg---gttcccttctttttacgccgtgtaatcttccttcgactc--attcttttgcagGACCTGCACGACTGTTTCTTGGTCATTTCGAATTTTCTATGAGAAG
         ||| |||||  ||| ||   | |||||    ||  ||  |     | |  ||| |||      |    |  |  ||  | |   |    ||  |||||| || |||||| |||| ||||||||||||  |||||||||||||
-----acaaatgtttgtgcattgcttttttcgttgtgtgtgtgcgcgcgcgcaatactctctatttgtaggatactgtgctgattgaaatatgaactcttcacagGACATGTACGACTATTTCATGGTCATTTCGAGGTTTCTATGAGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctggttcccttctttttacgccgtgtaatcttccttcgactcattcttttgcagGACCTGCACGACTGTTTCTTGGTCATTTCGAATTTTCTATGAGAAG
                             tcttccttcgactcat  CT-rich tract
          ttcttttta  TA-rich tract