Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagttgctacaacttttttccatggtttccctgccatacattagttttttattcaggttacataactgaacccttaatatgtcacaccttttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA

Basic information

species Zea mays
transcript GRMZM2G419694_T05
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G419694_T05 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g53240.4 (Oryza sativa), 3'ss of exon 1
tcagttgctacaacttttttccatggtttccct---gccatacattagttttttattcaggttaca-taactgaacccttaatatgtcacaccttttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA
     | ||||||| ||  |  |||  | |  |   |  ||   | ||  ||||| |||| | | | ||||  ||  |||  | |       | | | || |||||| ||||||  |||||||||||||||||||||| ||||||  |||||||||||| 
----cttctacaaccttgatttatgtatacattttagagatgtttcagccttttagtcagttcataataaccaaaatcttgttcttcttgtgcatgtatttcagAGAGGAGGCAGGCTGAGGCTAACCGTATCAGAGAAAAGTACAGTGACAGAATTCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33100992|gb|CF060952.1|CF060952
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGGTACCCTGACAGA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAG-TACCCTGACAGA
EST: gi|15057145|gb|BI361117.1|BI361117
EST:     AAGGAGCGTGATGGCCCAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCCATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|76287758|gb|DV027326.1|DV027326
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211258766|gb|FL031018.1|FL031018
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|60352182|gb|DN219155.1|DN219155
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|14244237|gb|BG842211.2|BG842211
EST:     AGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|28986825|gb|CB351328.1|CB351328
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211258765|gb|FL031017.1|FL031017
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027787|gb|FL306180.1|FL306180
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|18176526|gb|BM351459.1|BM351459
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027791|gb|FL306184.1|FL306184
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211030233|gb|FL306195.1|FL306195
EST:     AGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTGCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGA
genomic: AGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCT-CGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGA
EST: gi|211027797|gb|FL306190.1|FL306190
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211002077|gb|FL119250.1|FL119250
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211258760|gb|FL031012.1|FL031012
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027796|gb|FL306189.1|FL306189
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACTGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027786|gb|FL306179.1|FL306179
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211002075|gb|FL119248.1|FL119248
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|33103944|gb|CF063904.1|CF063904
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211004849|gb|FL119252.1|FL119252
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTAYCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211030232|gb|FL306194.1|FL306194
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211002073|gb|FL119246.1|FL119246
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|15426911|gb|BI542733.1|BI542733
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCCATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|17929998|gb|BM266958.1|BM266958
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|91871992|gb|EB401949.1|EB401949
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|60358602|gb|DN225575.1|DN225575
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|18170724|gb|BM340564.1|BM340564
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|60339197|gb|DN206170.1|DN206170
EST:     ACGAGCTCGTTCNAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: ACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|91871993|gb|EB401950.1|EB401950
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCCTGACAGA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCC-TGACAGA
EST: gi|17931360|gb|BM268326.1|BM268326
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211496223|gb|FL382412.1|FL382412
EST:     ------CGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|17929854|gb|BM266814.1|BM266814
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|17931560|gb|BM268520.1|BM268520
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027785|gb|FL306178.1|FL306178
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211258763|gb|FL031015.1|FL031015
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211258768|gb|FL031020.1|FL031020
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027792|gb|FL306185.1|FL306185
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|88749526|gb|DY533667.1|DY533667
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAAAAGTACCCTGACAGAT
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027798|gb|FL306191.1|FL306191
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211004848|gb|FL119251.1|FL119251
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027790|gb|FL306183.1|FL306183
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|18168345|gb|BM338185.1|BM338185
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211030231|gb|FL306193.1|FL306193
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|45847736|gb|CN071679.1|CN071679
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTACCCGTATCAGAGAGAAGTCCCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027794|gb|FL306187.1|FL306187
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027793|gb|FL306186.1|FL306186
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027788|gb|FL306181.1|FL306181
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|18167465|gb|BM337304.1|BM337304
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|16922807|gb|BM075799.1|BM075799
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|15057263|gb|BI361235.1|BI361235
EST:     GCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: GCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|60349765|gb|DN216738.1|DN216738
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|17931323|gb|BM268289.1|BM268289
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211002074|gb|FL119247.1|FL119247
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|78079144|gb|DV507556.1|DV507556
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|15177541|gb|BI398480.1|BI398480
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|16922901|gb|BM075893.1|BM075893
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|60353565|gb|DN220538.1|DN220538
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|91048098|gb|EB158516.1|EB158516
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|211027789|gb|FL306182.1|FL306182
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
EST: gi|60352183|gb|DN219156.1|DN219156
EST:     AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCG                         AGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA
genomic: AAGGAGCGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTCGgttcgtataa ... tttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttattcaggttacataactgaacccttaatatgtcacaccttttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA
                                          ccttttgtt  CT-rich tract
                             ttaatatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcagttgctacaacttttttccatggtttccctgccatacattagttttttattcaggttacataactgaacccttaatatgtcacaccttttgttacagAGAAGAGGCAATCTGAGGCTAACCGTATCAGAGAGAAGTACCCTGACAGAATTCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT