1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tattcatgctgtttgctatgtgtgcatctgttggaaaccaatacctacttaagtgaaagtggcttgtaacttctaacagatttttcatgtctgtggctagAACTTATGGATGGACAGGTGGAGACCTTTGTCGGAGATGAGGAAGGCGGGTCGCCTCAAGTTCCTTACGATGGGGAGCAGCCAACGCTGTATGATAGTGT
species | Zea mays |
transcript | GRMZM2G417223_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGTTCCTCGCCGGGGTCCTGCCCGCCTCTCCCTTCATCCCCTCCTCAG AACTTATGGATGGACAGGTGGAGACCTTTGTCGGAGATGAGGAAGGCGGGTEST: gi|149078399|gb|EE167173.2|EE167173
genomic: GCAGTTCCTCGCCGGGGTCCTGCCCGCCTCTCCCTTCATCCCCTCCTCAGgtaccacact ... ctgtggctagAACTTATGGATGGACAGGTGGAGACCTTTGTCGGAGATGAGGAAGGCGGGT
EST: GCAGTTCCTCGCCGGGGTCCTGCCCGCCTCTCCCTTCATCCCCTCCTCAG AACTTATGGATGGACAGGTGGAGACCTTTGTCGGAGATGAGGAAGGCGGGTEST: gi|76011885|gb|DT939055.1|DT939055
genomic: GCAGTTCCTCGCCGGGGTCCTGCCCGCCTCTCCCTTCATCCCCTCCTCAGgtaccacact ... ctgtggctagAACTTATGGATGGACAGGTGGAGACCTTTGTCGGAGATGAGGAAGGCGGGT
EST: GCAGTTCCTCGCCGGGGTCCTGCCCGCCTCTCCCTTCATCCCCTCCTCAG AACTTATGGATGGACAGGTGGAGACCTTTGTCGGAGATGAGGAAGGCGGGT
genomic: GCAGTTCCTCGCCGGGGTCCTGCCCGCCTCTCCCTTCATCCCCTCCTCAGgtaccacact ... ctgtggctagAACTTATGGATGGACAGGTGGAGACCTTTGTCGGAGATGAGGAAGGCGGGT
tacttaagtgaaagtggcttgtaacttctaacagatttttcatgtctgtggctagAACTTATGGATGGACAGGTGGAGACCTTTGTCGGAGATGAGGAAGGCGGGTCGCCTCAAGTTCCTTACGATGGGGAGCAGCCAACGCTGTATGATAGTGT
ttctaac putative branch site (score: 84)
atttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattcatgctgtttgctatgtgtgcatctgttggaaaccaatacctacttaagtgaaagtggcttgtaacttctaacagatttttcatgtctgtggctagAACTTATGGATGGACAGGTGGAGACCTTTGTCGGAGATGAGGAAGGCGGGTCGCCTCAAGTTCCTTACGATGGGGAGCAGCCAACGCTGTATGATAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- ttcatgc
- - - - -tgtttgc
- - - - - - - - - - - -gcatctg
- - - - - - - - - - - - - - - - - aaaccaa