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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcctgctctagatagtatggtagggtatatgcattgtcctttatatattggagtaatcctacgtagcattaatagtcacagtgtaatgtttcttttatagGTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA

Basic information

species Zea mays
transcript GRMZM2G416061_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211058973|gb|FL460147.1|FL460147
EST:     CTTAAGAACGGCACCGTCGTACACGGAACCATTACCG                         GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA
genomic: CTTAAGAACGGCACCGTCGTACACGGAACCATTACCGgtatgacgtc ... tcttttatagGTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA
EST: gi|60353877|gb|DN220850.1|DN220850
EST:     GGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCG                         GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA
genomic: GGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCGgtatgacgtc ... tcttttatagGTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA
EST: gi|211405279|gb|FL027503.1|FL027503
EST:     GGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCG                         GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA
genomic: GGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCGgtatgacgtc ... tcttttatagGTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA
EST: gi|211405278|gb|FL027502.1|FL027502
EST:     GGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCG                         GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA
genomic: GGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCGgtatgacgtc ... tcttttatagGTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA
EST: gi|211405280|gb|FL027504.1|FL027504
EST:     GGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCG                         GTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA
genomic: GGTGACCATCGAGCTTAAGAACGGCACCGTCGTACACGGAACCATTACCGgtatgacgtc ... tcttttatagGTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattggagtaatcctacgtagcattaatagtcacagtgtaatgtttcttttatagGTTATCCGGTCGATTATGGTTTACATATACGGACAGCTATCTTCAGATA
                     cattaat  putative branch site (score: 3)
                                         tgtttctttt  putative PPT
                                      taatgtttcttttata  TA-rich tract