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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcgtaactcaactctatttcaacatgtccacctttctacactgttaattctatttcatgcttatgccctacctttttccagACTATTTTGAGGGCACTATCACAAGCAGTATCCAAGATAGACACCGTGTATCATCATGCACTTCTACACAAT

Basic information

species Zea mays
transcript GRMZM2G415846_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G415846_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g47350.1 (Oryza sativa), 3'ss of exon 3
gtaagttcgtaac-tcaactctatttcaacatg-tccacctttctacactgttaattctatttcatgcttatgccctacct--ttttccagACTATTTTGAGGGCACTATCACAAGCAGTATCCAAGATAGACACCGTGTATCATCATGCACTTCTACACAAT
|||||| | |||| | |  |  | ||    ||  | | | |   ||    |  | |  |||   |     |||   | |||  |||||||||| | |||||  ||||||||| ||||||| ||||||||||| | | |||| |||||||| ||| |  |||||
gtaagtgcttaacattagtttcactttcctatccttcgcatgcttatgaagcaactcttatgataaatgcatgtatttcctgcttttccagACAACTTTGAAAGCACTATCAGAAGCAGTGTCCAAGATAGATATCATGTACCATCATGCTCTTTTGAACAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccacctttctacactgttaattctatttcatgcttatgccctacctttttccagACTATTTTGAGGGCACTATCACAAGCAGTATCCAAGATAGACACCGTGTATCATCATGCACTTCTACACAAT
               tgttaat  putative branch site (score: 3)
                                     tgccctacctttttcc  putative PPT
                 ttaattctatttcat  TA-rich tract