1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcgggatgcgaattgctgtaccgagctacagttctaaatgtcatgagctcaagttcaatgcaatatttggtgtttgttaattgaataccgcctctcttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG
species | Zea mays |
transcript | GRMZM2G414569_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATEST: gi|60352391|gb|DN219364.1|DN219364
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTACAGGCCATTCATEST: gi|71450228|gb|DR831278.1|DR831278
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATEST: gi|18179418|gb|BM380628.1|BM380628
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATEST: gi|91869882|gb|EB400589.1|EB400589
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATEST: gi|5770138|gb|AI973312.1|AI973312
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCANCAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATEST: gi|60394039|gb|DN226909.1|DN226909
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTACAGGCCATTCATEST: gi|91869884|gb|EB400590.1|EB400590
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATEST: gi|5325020|gb|AI783211.1|AI783211
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATEST: gi|211528538|gb|FL329337.1|FL329337
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATEST: gi|40286941|gb|CK327333.1|CK327333
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTACAGGCCATTCATEST: gi|18174124|gb|BM349512.1|BM349512
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATEST: gi|6020792|gb|AW065720.1|AW065720
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATEST: gi|6020682|gb|AW065490.1|AW065490
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCAT
EST: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCC
genomic: GGATCGCAACAAAAGATTGGGATGCTATTGCTAAGAAGGAAAAAATTGAGgtcgggatgc ... ttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCC
agttcaatgcaatatttggtgtttgttaattgaataccgcctctcttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG
tgttaat putative branch site (score: 63)
taccgcctctctttt putative PPT
tttgttaattgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgggatgcgaattgctgtaccgagctacagttctaaatgtcatgagctcaagttcaatgcaatatttggtgtttgttaattgaataccgcctctcttttgtgcagGGTGTAGAACTAGAGCTTCGGAAACTTGAAGTGGCAGTGCAGGCCATTCATCAGAACTTGATATACCTCAAAGAAAG
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