1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgcatcatcaaattacaatacacatcctaaaactatcaatgtatttgcagtgttctttatgtgacttgaaaatatttttttaatgtgttacattgaagAGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGGATGCTGTTGGAGAGAGTTCGTTTTACAGACGGTGTCGAATGTAACAAGA
species | Zea mays |
transcript | GRMZM2G412911_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAG AGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGGEST: gi|76915075|gb|DV165808.1|DV165808
genomic: ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAGgtgcatcatc ... tacattgaagAGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGG
EST: ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAG AGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGGEST: gi|76936583|gb|DV174787.1|DV174787
genomic: ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAGgtgcatcatc ... tacattgaagAGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGG
EST: ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAG AGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGG
genomic: ATACCAGCATCCCAGCATTTGAGGACTTCTATCTTGTGACCCCTAGGAAGgtgcatcatc ... tacattgaagAGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGG
tttgcagtgttctttatgtgacttgaaaatatttttttaatgtgttacattgaagAGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGGATGCTGTTGGAGAGAGTTCGTTTTACAGACGGTGTCGAATGTAACAAGA
ttttaat putative branch site (score: 3)
tttatgtgacttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatcatcaaattacaatacacatcctaaaactatcaatgtatttgcagtgttctttatgtgacttgaaaatatttttttaatgtgttacattgaagAGTGCTGGTAGTGGTGAGCCACAAAACCTTGGTGCTGAATATAGAAAGTGGATGCTGTTGGAGAGAGTTCGTTTTACAGACGGTGTCGAATGTAACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA