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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgcttctttgccgaccacttgttatgtgtaatttctcccttatctttctcatgattactaacagctttctactttgaccctgctacgttattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAG

Basic information

species Zea mays
transcript GRMZM2G409407_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 3
---------------------------------------gttgcttctttgccgaccacttgttatgtgtaatttctcc--cttatct--ttctcatgattactaacagctttctactttgaccctgctacgttattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAG
                                       ||   | |  ||     |  ||||  |    |  |   |    | |  |  |  | ||| || ||   |  | | |    ||   ||| | |  |||| | |||||||||| ||||| |||||||||||||||||  | || || ||||| |||||  | |||||||| ||  | || ||| | || |||||||||||   |||
gtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtcttttgtgttaaaaagatcaacagattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATATTCCCCAGACCTACGGCTGGACCTCTCAGGCCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 2
------------------gttgcttctttgccgaccac-ttgttatgtgtaatttctcccttatctttct------------catgattactaa--cagcttt--ctactttgaccctgctacgttat-tatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAG
                   ||||| |||||   ||    ||| |||   |||||  ||  | |  |||              || ||  | | |  || |||    || |||||| | |    |  |  | | ||||||| || ||||||||||| ||||| |||||| | || |||||||| |||||  | || ||||| ||  |||||||||| || |||||||||||    ||
gtaatttttaccaaaattattgct-ctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTCTCAGGCCAATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAG

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 3'ss of exon 2
gttgcttctttgccgaccacttgttatgtgtaatttctcccttatctttctcatgattactaacagctttctactttgaccctgctacgttat----tatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAG
     ||  | |  |     |    |  | | || |   | |  |   | | | | ||||  ||  |  |||  || |  | |  || |||||    ||  ||||  | |||||||||||||||||||| ||||| || |||||| |||| ||||| |||||  |||||||  | |||||||| |||||||||||||||   ||
----gttagtagtagtaatgtcaacacttctgatattgtcatgtttcgttttaagtttac--actacaatctctttgggtcttattatgttatgttgtacacagCGAGGCAAAAGAAGGCTGTGAAGATCTTCCCTCGTCCAACTTCTGGACCTCTCCGCCCTGTTGTGCATGGTCAGACTCTTAAGTACAACATGAAGGTCAG

upper sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 2
---------------------------------gttgcttctttgccgaccacttgttatgtgtaatttctcccttatctttctcatgattactaa--cagctttc----tactttgac---cctgctacgttattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAG
                                 |||  | || |   |   | | |||     ||||   ||  || || || ||| | || || |  | |   ||    |   |||||    ||| ||    ||  | ||||| | |||||||||||||||||||| |||||||| || ||  |||| || ||||| || ||||| ||  | || ||||| |||||||| |||||    ||
gtagctacttaaccattttaaaatggaaatggtgtttttcctgtcttgctaattagttggtcataatgattctgtt-tcattatcaagcttgcttattctgtgctcgcattttcttgacatgtctgttataccatc-tccagCTAGGCAAAAGAAGGCTGTGAAGATCTTCCCACGGCCCACGTCTGGACCACTTCGACCTATTGTCCATGGGCAAACTCTGAAGTACAATATGAAAGTTAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211263649|gb|FL031053.1|FL031053
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211266085|gb|FL031064.1|FL031064
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|13558589|gb|BG549945.1|BG549945
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211263644|gb|FL031048.1|FL031048
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211247721|gb|FL179851.1|FL179851
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211266082|gb|FL031061.1|FL031061
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|18175297|gb|BM350662.1|BM350662
EST:     CAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: CAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|18163726|gb|BM333565.1|BM333565
EST:     CCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: CCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211266086|gb|FL031065.1|FL031065
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|17932056|gb|BM269016.1|BM269016
EST:     ACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: ACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211263648|gb|FL031052.1|FL031052
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211247720|gb|FL179850.1|FL179850
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211456254|gb|FL273553.1|FL273553
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211129396|gb|FL066372.1|FL066372
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211266087|gb|FL031066.1|FL031066
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|33091972|gb|CF051966.1|CF051966
EST:     TGTCAAGACATGGTTCAACCAGCCCGCGCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211263643|gb|FL031047.1|FL031047
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCTCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211263650|gb|FL031054.1|FL031054
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|17929883|gb|BM266843.1|BM266843
EST:     TCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|71774174|gb|DR972054.1|DR972054
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|76281416|gb|DV020984.1|DV020984
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|18164502|gb|BM334341.1|BM334341
EST:     AGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: AGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|67026835|gb|CO455584.1|CO455584
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|27522089|gb|CA989195.1|CA989195
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|78085923|gb|DV514316.1|DV514316
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|6973668|gb|AW438242.1|AW438242
EST:     TGTCAAGACATGGTTCAACCAGCCCGCGCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|29946616|gb|CB816239.1|CB816239
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211266077|gb|FL031056.1|FL031056
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211266083|gb|FL031062.1|FL031062
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|71774173|gb|DR972053.1|DR972053
EST:     TTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|78180971|gb|DV551344.1|DV551344
EST:     TGTCAAGACATGGTTCAACCAGCCCGCGCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|7238188|gb|AW573410.1|AW573410
EST:     TG-CAAGACATGGTTCAACCAGCCCGCGCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211266080|gb|FL031059.1|FL031059
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211263641|gb|FL031045.1|FL031045
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211263645|gb|FL031049.1|FL031049
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211266081|gb|FL031060.1|FL031060
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
EST: gi|211266084|gb|FL031063.1|FL031063
EST:     TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCG                         CTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC
genomic: TGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctctt ... tattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctcatgattactaacagctttctactttgaccctgctacgttattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAG
                                            ttattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttgcttctttgccgaccacttgttatgtgtaatttctcccttatctttctcatgattactaacagctttctactttgaccctgctacgttattatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCACGCCCAACTGCTGGCCCTCTTCGCCCCATTGTGCAATGCCAGACTCTCAAGTACAACATGAAGTCGAG

- tgcttct
- - - - - - -cgaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctac