1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcttgctttttttgggttgcttaaattgagtaaacgggcagttttcttgtttgattttgtgctttatgttgatgctaatgctgttctcgtgctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGGAGCACTTTCCTATGGCCGCCTCCATCGCGGCCTCGTCCTTCTTTCCAG
species | Zea mays |
transcript | GRMZM2G406603_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAG ATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGEST: gi|149050307|gb|EE048579.2|EE048579
genomic: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAGgttcgttccc ... gctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
EST: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAG ATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGEST: gi|148931914|gb|EC875122.2|EC875122
genomic: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAGgttcgttccc ... gctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
EST: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAG ATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGEST: gi|149011230|gb|EE042311.2|EE042311
genomic: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAGgttcgttccc ... gctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
EST: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAG ATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGEST: gi|149097427|gb|EE183283.2|EE183283
genomic: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAGgttcgttccc ... gctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
EST: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAG ATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGEST: gi|211210381|gb|FL427966.1|FL427966
genomic: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAGgttcgttccc ... gctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
EST: GGCACCAACACCCAAGCCCCCTGTGCCTTCGCCGTCGCTGCCCGCGCAAG ATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGEST: gi|22133658|gb|BQ833827.1|BQ833827
genomic: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAGgttcgttccc ... gctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
EST: GGCACCAACACCCAAGCCCCCTGTGCCTTCGCCGTCGCTGCCCGCGCAAG ATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
genomic: CGCACCAACACCCAAGCCCCCTGTGCCCTCGCCGTCGCCGCCCGCGCAAGgttcgttccc ... gctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCG
cttgtttgattttgtgctttatgttgatgctaatgctgttctcgtgctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGGAGCACTTTCCTATGGCCGCCTCCATCGCGGCCTCGTCCTTCTTTCCAG
tgctaat putative branch site (score: 2)
ttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgctttttttgggttgcttaaattgagtaaacgggcagttttcttgtttgattttgtgctttatgttgatgctaatgctgttctcgtgctgaaccagATTGAGATCCCGGATTCAGACAGGTGCTACCATTCGATTTGATTTGGCGCGGAGCACTTTCCTATGGCCGCCTCCATCGCGGCCTCGTCCTTCTTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA