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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcaagttctaatttgcggtgcatacttgtttttagctgtatgtttgcctctttcatgcacgacattatgtttatctattgcctgcacttggtccacagGTACAAGGCTTTGTAGAGGACAACAATGGGAACAAAGCTTCGTTTTTGATAGGGATGTGGGACGAAAGCATATATTGTAGTAACTCTGATACTTCCAAGG

Basic information

species Zea mays
transcript GRMZM2G402653_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G402653_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g05870.1 (Oryza sativa), 3'ss of exon 6
attcaagttctaatttgcggtgc-atac-ttgtttttagctgtatgtttgcctctttcatgcacgacattatgtttatctattgcctgcacttg----gtccacagGTACAAGGCTTTGTAGAGGACAACAATGGGAACAAAGCTTCGTTTTTGATAGGGATGTGGGACGAAAGCATATATTGTAGTAACTCTGATACTTCCAAGG
     | | ||| | |  |   | || |  ||||||||  |||         | ||||  |   || || || || ||    ||| | |||||     ||||||||||||||||||||||||||||  |  ||||||||||| |||||||||||||||| |  ||||| ||||  || |||| |||||| |  |||||||||||||
----gaatgctactgtaagaaactatgcactgtttttacttgtgaacacaagtgtttctggtg-gatat-atcttcataccgtgcttacactttttatgtccacagGTACAAGGCTTTGTAGAGGATGATGATGGGAACAAACCTTCGTTTTTGATAGGAAAATGGGATGAAAATATGTATTATAGTAATTTAGATACTTCCAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211322661|gb|FL233011.1|FL233011
EST:     GTAAACTGAAGTTCAAAGAGCCATCACTTCTTGACCGGAATCCCCATCTA                         GTACAAGGCTTTGTAGAGGACAAC
genomic: GTAAACTGAAGTTCAAAGAGCCATCACTTCTTGACCGGAATCCCCATCTAgtatgtttta ... tggtccacagGTACAAGGCTTTGTAGAGGACAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcctctttcatgcacgacattatgtttatctattgcctgcacttggtccacagGTACAAGGCTTTGTAGAGGACAACAATGGGAACAAAGCTTCGTTTTTGATAGGGATGTGGGACGAAAGCATATATTGTAGTAACTCTGATACTTCCAAGG
                    attatgtttatctatt  TA-rich tract