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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggagttgtattctgtgtggactttggccttgtaatatctaggacatgatatgttctagtataaagttgtccattgaatggtatgcttccagctcatcttaacgatttgttgttggtttatgcagGAGGAATGAACGTTGCAAGGTTATAGCAAAAGATTTCTTTGTTGATTTGTAGAATAGAACTCTGGACCT

Basic information

species Zea mays
transcript GRMZM2G400655_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G400655_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g48530.1 (Oryza sativa), 3'ss of exon 6
gtggagttgtattctgtgtggactttggccttgtaatatctaggacatgatatgttctagtataaagttgtccattgaatggtatgcttccagctcatcttaacgatttgttgttggtttatgcagGAGGAATGAACGTTGCAAGGTTATAGCAAAAGATTTCTTTGTTGATTTGTAGAATAGAACTCTGGACCT
                ||  ||  ||    ||  |||  |||| || |  | |  | |    || |||| |      |||| | |  || |  || |    |||  ||   | |      |||||||||||||||  |||| ||||  | |||||| |||||||||  ||||||| | ||| |||||||||||||
-----------aaaactgcagatattacaatttaaatccctagtac-tactgttatgt----tagagttat-----aaatgttgtagtttcgtctaactgcaacttttccatata-----atgcagGAGGAATGATAGTTGTAAGGCAACAGCAAAGGATTTCTTTCATGATTTGCAAAATGGAACTCTGGACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattgaatggtatgcttccagctcatcttaacgatttgttgttggtttatgcagGAGGAATGAACGTTGCAAGGTTATAGCAAAAGATTTCTTTGTTGATTTGTAGAATAGAACTCTGGACCT
                          tcttaac  putative branch site (score: 2)
                         atcttaa  TA-rich tract