1 5' 3' | 2 5' 3' | 3 5' 3' |
...aagactgcgcttcgctcttcttgtggcgtcgagcaaaccccgcggccacgttgcgagtcgtgatcgcctgacccgtttcgcttcactgtcgtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGCTGCAGCAGCTACGCCTCCGCCTCCAGACCGCTGGCCTGCTCCCCGCCCC
species | Zea mays |
transcript | GRMZM2G400602_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGCEST: gi|91048435|gb|EB158853.1|EB158853
genomic: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTGgtcagctcct ... gtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGC
EST: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGCEST: gi|91869515|gb|EB400422.1|EB400422
genomic: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTGgtcagctcct ... gtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGC
EST: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGCEST: gi|91049980|gb|EB160398.1|EB160398
genomic: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTGgtcagctcct ... gtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGC
EST: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGCEST: gi|71427083|gb|DR808133.1|DR808133
genomic: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTGgtcagctcct ... gtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGC
EST: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGCEST: gi|50335309|gb|CO530435.1|CO530435
genomic: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTGgtcagctcct ... gtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGC
EST: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGCEST: gi|211171594|gb|FL423130.1|FL423130
genomic: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTGgtcagctcct ... gtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGC
EST: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGCATGCTGAC-GTCTCCGCGCEST: gi|149095442|gb|EE181086.2|EE181086
genomic: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTGgtcagctcct ... gtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGC
EST: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTG AGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGC
genomic: GGCTCGGGCGGTACCGCACCATCGTCCTCGCCTCCCTCCTCTTCGTCGTGgtcagctcct ... gtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGC
ccacgttgcgagtcgtgatcgcctgacccgtttcgcttcactgtcgtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGCTGCAGCAGCTACGCCTCCGCCTCCAGACCGCTGGCCTGCTCCCCGCCCC
gcctgac putative branch site (score: 12)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagactgcgcttcgctcttcttgtggcgtcgagcaaaccccgcggccacgttgcgagtcgtgatcgcctgacccgtttcgcttcactgtcgtcgctgcagAGCATGGGCATGCTGACCGTCTCCGCGCTCCCGGCGTTCCACCACGACGGCTGCAGCAGCTACGCCTCCGCCTCCAGACCGCTGGCCTGCTCCCCGCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - cttcttg
- - - - - - - - - - - - - - - gagcaaa
- - - - - - - - - - - - - - - - - - - - -gcggcca