1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccaattcactagatttgtcatcaaacaatgccgtgcaggcttaggctttcttgtttttgtcggaagtgtttaaaaaaaaagatttttgttgttcatgcagCCTCTGCAGTTGAAGGGCAAGTGAAAGAGAAGAGTCGTTTGTGTCAATTACTGAAAGAATTGAGCGAAAAATTTATG
species | Zea mays |
transcript | GRMZM2G400223_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATCTGCGGATGGAGCTGATGAGAAAGTCCATGCACGTTGGCTCACTAG CCTCTGCAGTTGAAGGGCAAGTGAAAGAGAAGAGTCGTTTGTGTCAATTACEST: gi|31664597|gb|CD573530.1|CD573530
genomic: TGATCTGCGGATGGAGCTGATGAGAAAGTCCATGCACGTTGGCTCACTAGgtgaataatt ... gttcatgcagCCTCTGCAGTTGAAGGGCAAGTGAAAGAGAAGAGTCGTTTGTGTCAATTAC
EST: TGATCTGCGGATGGAGCTGATGAGAAAGTCCATGCACGTTGGCTCACTAG CCTCTGCAGTTGAAGGGCAAGTGAAAGAGAAGAGTCGTTTGTGTCAATTAC
genomic: TGATCTGCGGATGGAGCTGATGAGAAAGTCCATGCACGTTGGCTCACTAGgtgaataatt ... gttcatgcagCCTCTGCAGTTGAAGGGCAAGTGAAAGAGAAGAGTCGTTTGTGTCAATTAC
ctttcttgtttttgtcggaagtgtttaaaaaaaaagatttttgttgttcatgcagCCTCTGCAGTTGAAGGGCAAGTGAAAGAGAAGAGTCGTTTGTGTCAATTACTGAAAGAATTGAGCGAAAAATTTATG
tttaaaaaaaaagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaattcactagatttgtcatcaaacaatgccgtgcaggcttaggctttcttgtttttgtcggaagtgtttaaaaaaaaagatttttgttgttcatgcagCCTCTGCAGTTGAAGGGCAAGTGAAAGAGAAGAGTCGTTTGTGTCAATTACTGAAAGAATTGAGCGAAAAATTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - catcaaa
- - - - - - - - - - - - -caatgcc
- - - - - - - - - - - - - - - - -tgcaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtt