1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgcgcacggccttctcatcactgctttgtgatgctatcgacacttttgtgaacagtatgattttgctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTTTGAGTTCCAGGCTGAGGTGTCCAGACTCATGGACATCATCATCAACTCA
species | Zea mays |
transcript | GRMZM2G399073_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTTEST: gi|149004856|gb|EE039364.2|EE039364
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTTEST: gi|149073272|gb|EE161562.2|EE161562
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTTEST: gi|166572262|gb|EG188999.1|EG188999
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG GGAAGCCGAGTCTATCTCTAGGAAGACTCTEST: gi|24767582|gb|CA402726.1|CA402726
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCT
EST: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTTEST: gi|31360086|gb|CD444443.1|CD444443
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: CCACCGACTCTGAGGTTGCCCAGAG GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTTEST: gi|148964727|gb|EC905993.2|EC905993
genomic: CCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTTEST: gi|149112828|gb|EE295636.2|EE295636
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
EST: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAG GGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
genomic: CTTGGTGCTGTCCCTCATGGCCTGTCCACCGACTCTGAGGTTGCCCAGAGgtgcgcacgg ... ctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTT
ctgctttgtgatgctatcgacacttttgtgaacagtatgattttgctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTTTGAGTTCCAGGCTGAGGTGTCCAGACTCATGGACATCATCATCAACTCA
ttttgct CT-rich tract
tatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcacggccttctcatcactgctttgtgatgctatcgacacttttgtgaacagtatgattttgctgcgtgcagGGAAGCTGAGTCTATCTCTAGGAAGACTCTTAGGAGCTCCGCCGAGAAGTTTGAGTTCCAGGCTGAGGTGTCCAGACTCATGGACATCATCATCAACTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA