Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatatacaaacctgacctcccctgcgtttatttagtgattcgaacttcaaaacttttatcctaagttactaaccatatgcactgtttgtgtcatttacagGGAAAAGCGCAAGGTTTTATTGCAACCGTGCAGTCTGTAGCTATATTGTTGGCACCACAATTTATGAGTCCACTGACAT

Basic information

species Zea mays
transcript GRMZM2G395279_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32922093|gb|CF026905.1|CF026905
EST:     ACTGTCAACTGACCAG                         GGAAAAGCGCAAGGTTTTATTGCAACCGTGCAGTCTGTAGCTATATTGTTG
genomic: ACTGTCAACTGACCAGgtacatatac ... tcatttacagGGAAAAGCGCAAGGTTTTATTGCAACCGTGCAGTCTGTAGCTATATTGTTG
EST: gi|32921103|gb|CF025915.1|CF025915
EST:     ACTGTCAACTGACCAG                         GGAAAAGCGCAAGGTTTTATTGCAACCGTGCAGTCTGTAGCTATATTGTTG
genomic: ACTGTCAACTGACCAGgtacatatac ... tcatttacagGGAAAAGCGCAAGGTTTTATTGCAACCGTGCAGTCTGTAGCTATATTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaaacttttatcctaagttactaaccatatgcactgtttgtgtcatttacagGGAAAAGCGCAAGGTTTTATTGCAACCGTGCAGTCTGTAGCTATATTGTTGGCACCACAATTTATGAGTCCACTGACAT
                     tactaac  putative branch site (score: 0)
     aacttttat  TA-rich tract