Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgcgtccttcaaagtttctggattgtctaattgtcgtgtatatgtaacacctgtgatcttagtaataaaaataataaatggctttgtgcttactgctctggctgttttgttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGGCTGTGGTCCTCTCTACTACCAAGACCAAGAAGCAGAACGCACCTGCGAA

Basic information

species Zea mays
transcript GRMZM2G394827_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G394827_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g57540.1 (Oryza sativa), 3'ss of exon 2
gtatgttgcgtccttcaaagtttctggattgtctaattgtcgtgtatatgtaacacctgtgatcttagtaataaaaataataaatggctttgtgct-tactgctctgg--ctgttttgttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGC---CAGCTGCAAAGGACTCGGCTGTGGTCCTCTCTACTACCAAGACCAAGAAGCAGAACGCACCTGCGAA
                        |   | || |  || |||   |  |   |  | |  |||   | | ||     | ||  | | |||||   | | |||   | |   |||| |||||||| ||| ||||||||||||||||| |||||||||||||   ||| || ||||||| |||||||||||||||| || |||||||||||||||||||| || || ||   
-----------------------gtcagtagt-tgcttctcgca-acgtcacaggctttagatgcaaattatgcctttgattca-gcctttgcaatgtcctgacatagtgttgttgtgttctgtaagGCTTGGCGAACAAGAAGACCGTGACGATCCAGCCATCAGGTGGAAAGGACGCGGCTGTGGTCCTCTCCACGACCAAGACCAAGAAGCAGAATGCCCCAGC---

upper sequence: GRMZM2G394827_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g46430.2 (Oryza sativa), 3'ss of exon 2
gtatgttgcgtccttcaaagtttctggattgtctaattgtcgtgtatatgtaacacctgtgatcttagtaataaaaataataaatggctttgtgcttactgctctggctgttttgttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGC---CAGCTGCAAAGGACTCGGCTGTGGTCCTCTCTACTACCAAGACCAAGAAGCAGAACGCACCTGCGAA
         |||  |    | |||| |      |   || | | |  ||| || |||    || | | |   |  |     |||       ||||| |||    ||  || | |||| ||| ||| ||||||||||||||||| |||||||||||||   |||  |  |||||| |||| ||||||||||| || |||||||||||||||||||| || || ||   
---------gtcagtagtcgcttcttg-caacattgctggctttttgatggaa-accaagcatttcatt--cagcatctgcaaa-------gtgctgacttgggtga-tgatgtgttttgtaagGCTTGGCGAACAAGAAGACCGTGACGATCCAGCCATCAGGCGTGAAGGACGCGGCCGTGGTCCTCTCCACAACCAAGACCAAGAAGCAGAATGCCCCAGC---

upper sequence: GRMZM2G394827_T03 (Zea mays), 3'ss of exon 2
lower sequence: AT2G19730.3 (Arabidopsis thaliana), 3'ss of exon 2
gtatgttgcgtccttcaaagtttctggattgtctaattgtcgtgtatatgtaacacctgtgatcttagtaataaaaataataaatggctttgtgcttactgctctggctgttttgttctg---ttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGGCTGTGGTCCTCTCTACTACCAAGACCAAGAAGCAGAACGCACCTGCGAA
                ||| |     | | |||| | |   |   | |  | | || | ||   |  ||  |     || |   | |  ||  ||| |    | ||  | ||||| | ||   | |||| | || ||||| ||||||||||| |||||| | ||||  ||||||   ||||| || ||| | || |||||||||||||||||||||   |||  |  
----------------aaaat-----ggtagtctgagttgagcagacacttcatac-tatgtattaggttttgt---tattgtcttgaattaggctaa--agtttgaatcttttgatgtggtttcagGTCTTGCAAACAAAAAGACTGTGACCATCCAGGCCGCTGACAAGGACCAAGCTGTTGTGCTCGCCACCACCAAGACCAAGAAGCAGAACAAGCCTAAGCT

upper sequence: GRMZM2G394827_T03 (Zea mays), 3'ss of exon 2
lower sequence: PP1S7_390V6.1 (Physcomitrella patens), 3'ss of exon 2
gtatgttgcgtccttcaaagtttctggattgtctaattgtcgtgtatatgtaacacctgtgatcttagtaataaaaataataaatggctttgtgcttactgctctggctgttttgttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGGCTGTGGTCCTCTCTACTACCAAGACCAAGAAGCAGAACGCACCTGCGAA---
         ||  | ||| |||    || ||| | | | |  ||   |   |     |  ||||||     | |   | || | |   ||    |           |   ||||    | ||||||||||||||||||||||||||| | |||   || ||   | | |      | || || ||  | || |||||||||||||||  ||||   || || ||   
---------gtattgcaatgttgt--gactgtatcactatgctg-ggactaactgggttcgatcttcacgttgattttgatgatttatttaacac----------agtatttttcaattcttagGTTTGGCGAACAAGAAGACTGTGGCCATCGCACCGGC---AGAAGGTCTTTCAGTAGTTCTTACCACCACCAAGACCAAGAAGAGGAACCAGCCCGCTAAGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37392746|gb|CF633626.1|CF633626
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|18649627|gb|BM498446.1|BM498446
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|50323416|gb|CO518542.1|CO518542
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60346709|gb|DN213682.1|DN213682
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60341855|gb|DN208828.1|DN208828
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|5740488|gb|AI948178.1|AI948178
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCGGGCGCTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|32809117|gb|CD961351.1|CD961351
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACCGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|30087987|gb|CB886192.1|CB886192
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|4804571|gb|AI665594.2|AI665594
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60344451|gb|DN211424.1|DN211424
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60396562|gb|DN229431.1|DN229431
EST:     ACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: ACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|8665876|gb|BE186692.1|BE186692
EST:     TCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: TCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|211004085|gb|FL433379.1|FL433379
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60344773|gb|DN211746.1|DN211746
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|22489814|gb|BU049737.1|BU049737
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|211498632|gb|FL475537.1|FL475537
EST:     TCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: TCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60399308|gb|DN232122.1|DN232122
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|32799164|gb|CD951400.1|CD951400
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACCGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60397312|gb|DN230128.1|DN230128
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|78026395|gb|DV494782.1|DV494782
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|166592175|gb|EG284292.1|EG284292
EST:     CTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAAGACTGCAAAGGACTC
genomic: CTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCA-G-CTGCAAAGGACTC
EST: gi|60359639|gb|DN226612.1|DN226612
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|31557930|gb|CD527142.1|CD527142
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|211498633|gb|FL475538.1|FL475538
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|16926566|gb|BM079634.1|BM079634
EST:     CACCAAGGAGCCGAACAACCTNTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60359769|gb|DN226742.1|DN226742
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|30306772|gb|CD001445.1|CD001445
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|211308013|gb|FL101160.1|FL101160
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|211374748|gb|FL076486.1|FL076486
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60352621|gb|DN219594.1|DN219594
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|33467200|gb|CF244249.1|CF244249
EST:     CACCAAGGAGCCGAACAACCTTTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|20300560|gb|BQ163503.1|BQ163503
EST:     CATCCACTCCTTCAAACACTCGG                         GTTTGGCGANCAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60396584|gb|DN229453.1|DN229453
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|78113289|gb|DV531681.1|DV531681
EST:     CTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|15082597|gb|BI389281.1|BI389281
EST:     CACCAAGGAGCCGAACAACCTCTACAACGTCCACTCCTACAAATACTCTG                         GCTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|9951967|gb|BE638550.1|BE638550
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|87153139|gb|DY397928.1|DY397928
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|84969839|gb|DW468254.1|DW468254
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|32826107|gb|CD965785.1|CD965785
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACCGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|211305999|gb|FL101159.1|FL101159
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|60337678|gb|DN204651.1|DN204651
EST:     CACCAAGGAGCCGAACAACCTTTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|71421266|gb|DR805364.1|DR805364
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|211305998|gb|FL101158.1|FL101158
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCA
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCA
EST: gi|21843254|gb|BQ703835.1|BQ703835
EST:     TCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: TCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|32807872|gb|CD960106.1|CD960106
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACCGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|76926032|gb|DV170693.1|DV170693
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|31909339|gb|CD650869.1|CD650869
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|21891436|gb|BQ744649.1|BQ744649
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|211175879|gb|FL475293.1|FL475293
EST:     CACCACGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|67013976|gb|CO442725.1|CO442725
EST:     AACCTCTTCAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACCGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: AACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|5608413|gb|AI901990.1|AI901990
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
EST: gi|74241858|gb|DT649772.1|DT649772
EST:     CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGG                         GTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG
genomic: CACCAAGGAGCCGAACAACCTCTACAACATCCACTCCTTCAAACACTCGGgtatgttgcg ... gttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataaaaataataaatggctttgtgcttactgctctggctgttttgttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGGCTGTGGTCCTCTCTACTACCAAGACCAAGAAGCAGAACGCACCTGCGAA
                       tgcttac  putative branch site (score: 2)
                                         ttttgttct  putative PPT
     aaataataaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttgcgtccttcaaagtttctggattgtctaattgtcgtgtatatgtaacacctgtgatcttagtaataaaaataataaatggctttgtgcttactgctctggctgttttgttctgttagGTTTGGCGAACAAGAAGACTGTGACGATCCAGCCAGCTGCAAAGGACTCGGCTGTGGTCCTCTCTACTACCAAGACCAAGAAGCAGAACGCACCTGCGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC