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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccctttacttcctgttcctctttacattatcacaccatccatttcttaagatcactggtgttctggaacgatcgctgaattctattgtttgctgcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATGGCATTTCGAGTTTTCCATGGTAGAGATGGGGTTGTTCCACTTTCAGAAG

Basic information

species Zea mays
transcript GRMZM2G394410_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G394410_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g43060.1 (Oryza sativa), 3'ss of exon 2
gtatgccctttacttcctgttcctctttacattatcacaccatccatttcttaaga-tcactggtgttctgga-acgatcgctgaattctattgtttgctgcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATGGCATTTCGAGTTTTCCATGGTAGAGATGGGGTTGTTCCACTTTCAGAAG
||| ||||||||| | |  | |||| | |  ||||| ||       ||||| || | |     || || ||||  | || ||| || | |||  |||||||||||| ||||||||||||| |||||| || ||||| |||||||| || ||||||||||||||||||||||||||||||||   |||||||||||||||||||||| | |
gtaagccctttaccttccat-cctcataatcttatcgcat-----gtttctgaaaaattggatgtattgtggatgccattgctcaactatatcatttgctgcttgtaaagGCAAGAGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTCCACTTTCACATG

upper sequence: GRMZM2G394410_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv13s0019g03990.t01 (Vitis vinifera), 3'ss of exon 2
gtatgccctttacttcctgttcctctttacattatcacaccatccatttcttaagatcactggtgttctggaacg-atcgctgaattctattgtttgctgcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATGGCATTTCGAGTTTTCCATGGTAGAGATGGGGTTGTTCCACTTTCAGAAG
       || |  | | | |   |  || ||    ||  ||    | ||  | |  |  | |    | |  | || | | |  |||   |||  |  ||   ||   |||   | ||||| || || || ||||| |||||||| || |||||||| ||||||||  | |||||||||||  | || ||||||||||||||||| | | 
-----ttctgtgatgcttat--atgattgcagaggcatgcc--tgacttggtgaattgccagaaaattttaatcggaacacctaatgacatttctctctttctgcacagGTGCGTGGAGCAAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATATGGCATTCAGGGTTTTCCATGGCCGTGACGGGGTTGTTCCACTTTCTGGAA

upper sequence: GRMZM2G394410_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv02s0033g01160.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------------------------------gtatgccctttacttcctgttcctctttacattatcacaccatccatttcttaagatcac---tggtgttctggaacgatcgctgaattctat--tgtttgctgcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATGGCATTTCGAGTTTTCCATGGTAGAGATGGGGTTGTTCCACTTTCAGAAG
                                                 ||||   |||| |  | |  |  |  |   | |   | |  ||    | ||| |  |      | || ||||| ||     |   |    |||  | | |  ||  |    |||   |||||||||  || || |||||||||||||| || |||||||| |||||||||    | || ||||| |  ||||||||||| ||||| ||||   
gtgagttgttattctcttttgttctctctgcctttttcttcttgattttgtatagtcttttccccgtactaatgctagaactgcaatatgatatggtccttgaatttgtctgttgtcttctgtaatacgagaaaacccttatgctatcttttgtctcatcagGTGCGAGGAGCCAGAGGTCCAATTTTCGAAGATGGCCCCAATTTTGATATGGCATTTAAGCTCTTTCATGGGAAGGATGGGGTTGTCCCACTCTCAGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76014968|gb|DT942138.1|DT942138
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|76925550|gb|DV170479.1|DV170479
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|50325381|gb|CO520507.1|CO520507
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|76291618|gb|DV031186.1|DV031186
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|76930321|gb|DV172337.1|DV172337
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|76281948|gb|DV021516.1|DV021516
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|76018078|gb|DT945248.1|DT945248
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|76921067|gb|DV168446.1|DV168446
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|33100336|gb|CF060296.1|CF060296
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|91871803|gb|EB401760.1|EB401760
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|89760965|gb|DY689166.1|DY689166
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|78079599|gb|DV508011.1|DV508011
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|33100155|gb|CF060115.1|CF060115
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGTCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|76280469|gb|DV020037.1|DV020037
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|74241488|gb|DT649402.1|DT649402
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|91878188|gb|EB408145.1|EB408145
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|78114180|gb|DV532569.1|DV532569
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|32839537|gb|CD979218.1|CD979218
EST:     TCAATGAGCCTACGAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|78073863|gb|DV502297.1|DV502297
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|76919522|gb|DV167759.1|DV167759
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|89764283|gb|DY691146.1|DY691146
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|91053007|gb|EB163425.1|EB163425
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|211118088|gb|FL110975.1|FL110975
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|211118087|gb|FL110974.1|FL110974
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|71771299|gb|DR969236.1|DR969236
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|211118091|gb|FL110978.1|FL110978
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|71769244|gb|DR967181.1|DR967181
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|211118086|gb|FL110973.1|FL110973
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|24462491|gb|BM660022.1|BM660022
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCC
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCC
EST: gi|93284017|gb|EB676281.1|EB676281
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|211118089|gb|FL110976.1|FL110976
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|211118090|gb|FL110977.1|FL110977
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|76284557|gb|DV024125.1|DV024125
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
EST: gi|76920838|gb|DV168333.1|DV168333
EST:     TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCC                         GCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG
genomic: TCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 60

AGAAACCGTCGTCCAACAAGGAATTGAAAGGTGCCCATTCCTGAGGAACATCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATGGCATTTCGAGTTTTCCATGGTAGAGATGGGGTTGTTCCACTTTCAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 596

AGAAACCGTCGTCCAACAAGGAATTGAAAGGTGCCCATTCCTGAGGAACATCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATGGCATTTCGAGTTTTCCATGGTAGAGATGGGGTTGTTCCACTTTCAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 542

AGAAACCGTCGTCCAACAAGGAATTGAAAGGTGCCCATTCCTGAGGAACATCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATGGCATTTCGAGTTTTCCATGGTAGAGATGGGGTTGTTCCACTTTCAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 670

AGAAACCGTCGTCCAACAAGGAATTGAAAGGTGCCCATTCCTGAGGAACATCAATGAGCCTACAAGTTTTTCCTTCTCGTCCGTCAACTTCCCTATTCCCgtatgccctt ... gcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATGGCATTTCGAGTTTTCCATGGTAGAGATGGGGTTGTTCCACTTTCAGAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatcactggtgttctggaacgatcgctgaattctattgtttgctgcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATGGCATTTCGAGTTTTCCATGGTAGAGATGGGGTTGTTCCACTTTCAGAAG
                             aattctatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgccctttacttcctgttcctctttacattatcacaccatccatttcttaagatcactggtgttctggaacgatcgctgaattctattgtttgctgcttgtgaagGCAAGAGGAGCCAAGGGACCGATTTTCGAAGATGGGCCTAATTTTGACATGGCATTTCGAGTTTTCCATGGTAGAGATGGGGTTGTTCCACTTTCAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG