1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacgaattgaaaatacatgcatactcttcaatacatgtcgttttcatattgtattaagacttaccgtcaatgaaacccattatttttttggtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCACCATCCCCATCACCGGCACCGGCATCAACCCGGCTAGGAGCCTTGGCG
species | Zea mays |
transcript | GRMZM2G392975_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTEST: gi|149079702|gb|EE168703.2|EE168703
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACT
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCEST: gi|76923442|gb|DV169489.1|DV169489
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCEST: gi|76285262|gb|DV024830.1|DV024830
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCCACTTTGCEST: gi|21331663|gb|BQ487044.1|BQ487044
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCC-ACCTTGC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCTCATGTCCCC ATCCTTGCTCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCEST: gi|148931929|gb|EC875151.2|EC875151
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCCATTGGGTTCGCGGTGTTCCTGGGTCCACCTTGCEST: gi|60341153|gb|DN208126.1|DN208126
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGG-TCCACCTTGC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCTCATGTCCCC ATCCTTGCTCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCEST: gi|211489110|gb|FL100837.1|FL100837
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCAATTGGGGGTTCGCGGTGEST: gi|76012460|gb|DT939630.1|DT939630
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGG--TTCGCGGTG
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCCATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCEST: gi|71330068|gb|DR801773.1|DR801773
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCCCTGCCAATTGGGTTCGCGGEST: gi|149111018|gb|EE294517.2|EE294517
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGG
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTC-ACCTTGCCEST: gi|149099303|gb|EE185339.2|EE185339
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCEST: gi|9732073|gb|BE510825.1|BE510825
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCTCATGTCCCC ATCCTTGCTCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCEST: gi|94472445|gb|EB701403.1|EB701403
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCEST: gi|211493182|gb|FL033666.1|FL033666
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCEST: gi|31350056|gb|CD434413.1|CD434413
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
EST: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCC ATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
genomic: TCTTCTCGGCCACCGATGCCAAGAGGAACGCCAGGGACTCCCATGTCCCCgtaagtactc ... gtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCC
atattgtattaagacttaccgtcaatgaaacccattatttttttggtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCACCATCCCCATCACCGGCACCGGCATCAACCCGGCTAGGAGCCTTGGCG
gacttac putative branch site (score: 2)
attatttttttggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacgaattgaaaatacatgcatactcttcaatacatgtcgttttcatattgtattaagacttaccgtcaatgaaacccattatttttttggtgaaaacagATCCTTGCCCCACTGCCAATTGGGTTCGCGGTGTTCCTGGTCCACCTTGCCACCATCCCCATCACCGGCACCGGCATCAACCCGGCTAGGAGCCTTGGCG
- - - - - - atacatg
- - - - - - -tacatgc
- - - - - - - - - - - - - - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgaaa