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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtttgctctctcgatcagcttcagttttttagcggccctttttctgcttctcgaccttcgcgctagctggccatgatcccatgacaattcacgagggtttcgtttggggtgcgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTCATCCTCGGCGGTGGCGCCGGGACCAGGCTCTTCCCGCTTACCAGACGCA

Basic information

species Zea mays
transcript GRMZM2G391936_T05
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G391936_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g52460.1 (Oryza sativa), 3'ss of exon 1
------------------------------gtcagtttgctctctcgatcagcttcagttttttagcggccctttttctgcttctcgaccttcgcgc-tagctggccatgatcccatgaca-attcacgagg-gtttcgtttggggtgcgtggtg---cagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTCATCCTCGGCGGTGGCGCCGGGACCAGGCTCTTCCCGCTTACCAGACGCA
                                    |  |||||||  ||    ||  | | |         | | | |   | |  |  |       ||  |    ||      ||| |     | || || | ||  ||||   | |||||||   ||||||||||||  ||||||||||||  || |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||  ||||
gtcagtgcacatgctctctctctctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtcgcgcgcgcgcggtgcttgatttgtttttcgtggtgttgcagTCGGAGGACGCGGCGCTGGAGGCGCGGGACTCGAAGACGGTGGTGGCGGTCATCCTCGGCGGCGGCGCGGGGACGAGGCTGTTCCCGCTCACCAAGCGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149102318|gb|EE188184.2|EE188184
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|71435811|gb|DR816861.1|DR816861
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117825|gb|FL303269.1|FL303269
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|50335822|gb|CO530948.1|CO530948
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|13125860|gb|BG316430.1|BG316430
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGCGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCG
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCG