1 5' 3' | 2 5' 3' | 3 5' 3' |
gttgctgtgctctgaaagagtgtgacctacttattcccttataaagtgtatcaaccgtttactcatgtttttgccctgttaaattcagGTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATGTTTTCAGCCCCTAACTACTGTGGAGAATTTGATAACGCTGGTGCCATGA
species | Zea mays |
transcript | GRMZM2G390076_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAATTCCTTGAGAAGCATGATTTGGACCTCATCTGCCGAGCCCATCAG GTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATGEST: gi|93284121|gb|EB676385.1|EB676385
genomic: CTGAATTCCTTGAGAAGCATGATTTGGACCTCATCTGCCGAGCCCATCAGgttgctgtgc ... ttaaattcagGTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATG
EST: CTGAATTCCTTGAGAAGCATGATTTGGACCTCATCTGCCGAGCCCATCAG GTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATGEST: gi|113840975|gb|DW966372.1|DW966372
genomic: CTGAATTCCTTGAGAAGCATGATTTGGACCTCATCTGCCGAGCCCATCAGgttgctgtgc ... ttaaattcagGTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATG
EST: GATTTGGACCTCATCTGCCGAGCCCATCAG GTTGTCGAAGATGGATATGAGTTTT-CGCTAGCCGCCAACTCGTAACAATGEST: gi|6695722|gb|AW288800.1|AW288800
genomic: GATTTGGACCTCATCTGCCGAGCCCATCAGgttgctgtgc ... ttaaattcagGTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATG
EST: CTGAATTCCTTGAGAAGCATGATTTGGACCTCATCTGCCGAGCCCATCAG GGTGGCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATGEST: gi|60359288|gb|DN226261.1|DN226261
genomic: CTGAATTCCTTGAGAAGCATGATTTGGACCTCATCTGCCGAGCCCATCAGgttgctgtgc ... ttaaattcagGTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATG
EST: CTGAATTCCTTGAGAAGCATGATTTGGACCTCATCTGCCGAGCCCATCAG GTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATG
genomic: CTGAATTCCTTGAGAAGCATGATTTGGACCTCATCTGCCGAGCCCATCAGgttgctgtgc ... ttaaattcagGTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATG
ttcccttataaagtgtatcaaccgtttactcatgtttttgccctgttaaattcagGTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATGTTTTCAGCCCCTAACTACTGTGGAGAATTTGATAACGCTGGTGCCATGA
ccctgtt CT-rich tract
ttataaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgctgtgctctgaaagagtgtgacctacttattcccttataaagtgtatcaaccgtttactcatgtttttgccctgttaaattcagGTTGTCGAAGATGGATATGAGTTTTTCGCTAGCCGCCAACTCGTAACAATGTTTTCAGCCCCTAACTACTGTGGAGAATTTGATAACGCTGGTGCCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA