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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagaggatgtgaagatatcgcacaccttggacactggagtatctaacactggttctcttctcttcagGATCCTGACGATGAGTCCGGTGGGATGAGAAGATCGTGCAGCAGAGGTGCGAAGCGCAGCCGCACCGCGGAGGTGCACAACCTGTCCGAAAGGGTAAGTC

Basic information

species Zea mays
transcript GRMZM2G387528_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149077107|gb|EE165767.2|EE165767
EST:     AACAGAAGAGGAAGACCCTGCAGGCCGAGTGTTCCGCGAGTCAAGATGAT                         GATCCTGACGATGAGTCCGGTGGGATGAGAAGATCGTGCAGCAGAGGTGCG
genomic: AACAGAAGAGGAAGACCCTGCAGGCCGAGTGTTCCGCGAGTCAAGATGATgtaagcagag ... ttctcttcagGATCCTGACGATGAGTCCGGTGGGATGAGAAGATCGTGCAGCAGAGGTGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatatcgcacaccttggacactggagtatctaacactggttctcttctcttcagGATCCTGACGATGAGTCCGGTGGGATGAGAAGATCGTGCAGCAGAGGTGCGAAGCGCAGCCGCACCGCGGAGGTGCACAACCTGTCCGAAAGGGTAAGTC
                            atctaac  putative branch site (score: 2)
                                    ctggttctcttctctt  CT-rich tract
                           tatctaa  TA-rich tract