Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actaatagtaacaagtcaaccttttttgggttgagtgtagcaacaataattttttgtcttttatttttgtaataatgcaatttgttgatgccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA

Basic information

species Zea mays
transcript GRMZM2G382914_T04
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382914_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g07260.1 (Oryza sativa), 3'ss of exon 2
actaatagta-acaagtcaaccttttttgggttgagtgt--agcaacaataattttttgtctttta-tttttgtaataatgcaatttgttgatgccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA
     | ||    |     | |      |  | || |    | ||||  |||  | ||  || ||  ||||  |  |||    |||   |  ||  |  | ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || 
----gtggtgcgtactgtgaacaaaacagaatggattactaatcaactgtaagctcttaactgttgcttttcattctaacatgattcacttttgtaacctccagGGCCGTCCGAAGGGTGTCACCCCCAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTACTTGGAGTCGAT

upper sequence: GRMZM2G382914_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA15G41550.1 (Glycine max), 3'ss of exon 2
actaatagtaacaagtcaaccttttttgggt-tgagtgtagcaacaata-attttttgtcttttatttttgtaataatgcaat-ttgttgatgccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA
   |  ||| || | | |  || ||  |    ||| |||   || | |    |   |     | | ||    | | ||      |||   ||||  ||||||||| |||||||||||||| || || || ||||| |||||||||||||| ||| |  ||||| | || |||||| |||| 
--gaggagttacta-ttattctattaagaccatgaatgtcagaaaagtgtggtgagtagtagtgacttgaaaagtgattttgccttgactatgctgttttcagGGACGTCCAAAAGGTGTAACACCTAAATACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTTGGAATTGAG

upper sequence: GRMZM2G382914_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G17600.1 (Glycine max), 3'ss of exon 2
actaatagtaacaagtcaaccttttttgggttgagtgtagcaacaataattttttgtcttttatttttgtaataatgcaat-ttgttgatgccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA
  |  || | |    |     ||   ||  ||   | ||| |     | ||   ||  | | | ||    |||  |      |||   ||||  ||||||||| ||||| |||||||| || || || ||||| |||||||||||||| ||| |  ||||| | || || ||| |||| 
ttttttatttaacttttgcttttgggtgtattagttatag-agtgtgatttgagtggttgtgacttgaaaaatggttttgccttgactatgctgttttcagGGACGTCCTAAAGGTGTAACACCTAAATACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTCGGAATTGAG

upper sequence: GRMZM2G382914_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT1G79550.1 (Arabidopsis thaliana), 3'ss of exon 1
-actaatagtaacaagtcaaccttttttgggttgagtgtagcaacaataattttttgtcttttatttttgtaataatgcaatttgttgatgccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA
 | |  |  ||  ||||  || |   |  | ||      |    ||||    |  || || ||   ||  |     |      | |  ||     |||||||| || ||||||||||| || || ||||||||||| ||||||||||| ||  | |||||||| || ||||| ||||| 
taattgttttagtaagtttacttggatatgtttatactcaagttcaattggatgatg-ctgttgaattaatggatgtatctgatctcaatttatgtttcagGGCCGCCCAAAAGGTGTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCCAGATTGTCTGAACTTCTTGGTGTTGAG

upper sequence: GRMZM2G382914_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv19s0085g00370.t01 (Vitis vinifera), 3'ss of exon 1
actaatagtaacaagtcaaccttttttgggttgagtgtagcaacaataattttttgtcttttatttttgtaataatgcaatttgttgatgccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA
  |  |  |         || || | ||| || | |      |  ||| ||||   | || || |||   ||       |||      || | ||||||||| || ||||| ||||| || || |||||||||||||| |||||||| ||| |  ||||||| || ||||||||||| 
gtttttgtttctttcctgactttctatggattcatttcttggaatatatttttacttgttctaatttatgaaactgatgattctgaattgtcgttttcagGGGCGCCCAAAGGGTGTTACACCTAAGTACAGCTTGAAACCTCTTGTGCCAAGGCTGTCTGAACTTCTTGGAGTTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15177493|gb|BI398432.1|BI398432
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|148937378|gb|EC881559.2|EC881559
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|211458748|gb|FL050184.1|FL050184
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|148934221|gb|EC878242.2|EC878242
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|67031860|gb|CO460609.1|CO460609
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|67015745|gb|CO444494.1|CO444494
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|148947626|gb|EC893106.2|EC893106
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|31909251|gb|CD650825.1|CD650825
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCTTGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|149089819|gb|EE179096.2|EE179096
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|148961193|gb|EE011908.2|EE011908
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|149089095|gb|EE178268.2|EE178268
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|29945078|gb|CB815458.1|CB815458
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|149096538|gb|EE182286.2|EE182286
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|211471385|gb|FL050258.1|FL050258
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|22935592|gb|BU571867.1|BU571867
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|67012385|gb|CO441134.1|CO441134
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|67014158|gb|CO442907.1|CO442907
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|60396216|gb|DN229085.1|DN229085
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|78109940|gb|DV528355.1|DV528355
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|211466338|gb|FL050238.1|FL050238
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|31349922|gb|CD434279.1|CD434279
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|109179056|gb|EC379786.1|EC379786
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|78026883|gb|DV495270.1|DV495270
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|67031113|gb|CO459862.1|CO459862
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|22715290|gb|BU197684.1|BU197684
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|5342995|gb|AI795300.1|AI795300
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|60359146|gb|DN226119.1|DN226119
EST:     GTCATCCTCGCNCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: GTCATCCTCGC-CAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|31356119|gb|CD440476.1|CD440476
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|71762961|gb|DR960898.1|DR960898
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|108953205|gb|EC364637.1|EC364637
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|211458756|gb|FL050192.1|FL050192
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|6626452|gb|AW257984.1|AW257984
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|67032286|gb|CO461035.1|CO461035
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|31356342|gb|CD440699.1|CD440699
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|4730492|gb|AI649658.1|AI649658
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|213170620|gb|FM193204.1|FM193204
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|71316996|gb|DR795183.1|DR795183
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|4776084|gb|AI665087.1|AI665087
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|149111078|gb|EE294575.2|EE294575
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|148933205|gb|EC876853.2|EC876853
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|29544513|gb|CB604893.1|CB604893
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|31356173|gb|CD440530.1|CD440530
EST:     GCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: GCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|21390091|gb|BQ528140.1|BQ528140
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|31355954|gb|CD440311.1|CD440311
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
EST: gi|31351413|gb|CD435770.1|CD435770
EST:     TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTG                         GGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA
genomic: TCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1457

TGCCCAGAAGATCACCGACGACACCCGCATCCGCGCCTCCGTCCCCACCATCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2300

TGCCCAGAAGATCACCGACGACACCCGCATCCGCGCCTCCGTCCCCACCATCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1130

TGCCCAGAAGATCACCGACGACACCCGCATCCGCGCCTCCGTCCCCACCATCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1570

TGCCCAGAAGATCACCGACGACACCCGCATCCGCGCCTCCGTCCCCACCATCAAGTTCCTCCTCGAGAAGGGCGCCAAGGTCATCCTCGCCAGCCACCTGgtgagtcgct ... ccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataattttttgtcttttatttttgtaataatgcaatttgttgatgccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA
                                     tgttgat  putative branch site (score: 1570)
                                             ccattttc  CT-rich tract
             ttttatttttgtaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actaatagtaacaagtcaaccttttttgggttgagtgtagcaacaataattttttgtcttttatttttgtaataatgcaatttgttgatgccattttcagGGTCGTCCAAAAGGTGTCACCCCAAAGTACAGCTTGAAGCCTCTTGTTCCACGCTTGTCTGAGCTCCTTGGAGTTGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - caacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat