Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcgcccactcgtcctcggcatgccgcgggccgcgccgtgtggtgggttcatggatggatggatggatcgatctgtggcgcggactgacgtgttggtgggtggtttgcgtgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCGGGCCCGCGACGACGGGC

Basic information

species Zea mays
transcript GRMZM2G382534_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382534_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g03370.2 (Oryza sativa), 3'ss of exon 2
gtgagttcgcccactcgtcctcggcatgccgcgggc-cgcgc-cgtgtggtgggttcatggatggatggatggatcgatctgtggcgcggactgacgtgttggtgggtggtttgcgtgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCGGGCCCGCGACGACGGGC---
                              |   || | | | |  |    |    || |       |  | | |||   |||  | ||   ||  || |||    |   |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||   
------------------------------gtaagcgcacacacacgcaccgtccgcacgacgccgcgcgtcgctcg---tgtaac-cgtgttg--gttttgccttgccattt-tgcgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCG--CCCGCGA-GACGGGCCGT

upper sequence: GRMZM2G382534_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g38940.1 (Oryza sativa), 3'ss of exon 1
----gtgagttcgccc--actcgtcctcggcatgccgcgggccgcgccgtgtggtgggttcatggatg--gatggatggatcgatctg----tggcgcggactgacgtgttggtg--ggtggtttgcgtgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCGGGCCCGCGACGACGGGC
    ||    ||| ||   |||| |  || |||     | | | ||| |  | ||   ||  || | |  |  ||  |   || || |     || |  |   | |  ||| | |  |  |||  | | |  |||||||||||||||||||||||||||||||||||                                                                  
gttcgtactctcggcctagctcgccgccgtcatctaaggtgacacgc-gcattgtttcttggtgcagGCCGGCGGCGGCGACGTTCCGGCGACGGAGATGGTCGGCACGTTCGCGTTGTCGGTGGGGGCGGCGGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACC------------------------------------------------------------------

upper sequence: GRMZM2G382534_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv02s0025g00240.t01 (Vitis vinifera), 3'ss of exon 2
gtgagttcgcccactcgtcctcggcatgccgcgggccgcgccgtgtggtgggttcatggatggatggatggatcgatctgtggcgcggactgacgtgtt---ggtgggtg--gtttgcgtgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCGGGCCCGCGACGACGGGC
                          |      |    |||  |  | |   |||||| ||  |  | || |   |||  ||  |     ||| |  |     |||||||  |||      ||||||||||||||||| |||||||||||||| |||   ||||| ||||| || || |||||||| |||||||||                            
-------------------------gtaagttagctaacgctataagct---ttcatgtattaactgctgaaa-aatccttgaagaaagatgatgaatctcaagtgggtgctgttgattatcagGTGGGGATGGAGTTTTGGGCGCGGTGGGCTCACAAAGCGCTCTGGCATGCTTCACTGTGGCATATGCACGAG----------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatggatcgatctgtggcgcggactgacgtgttggtgggtggtttgcgtgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCGGGCCCGCGACGACGGGC
                       gactgac  putative branch site (score: 2)