1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgctgttttattgataccaattgtatgggtatagttcagcaaagcgttctgccctacactttgatgcttataaatctttttgcctcctctatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTGCAACTTACATTGTTGAAGGGGGGATGACCAACACATACACAAATATAA
species | Zea mays |
transcript | GRMZM2G377609_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTEST: gi|78111205|gb|DV529602.1|DV529602
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTEST: gi|31360028|gb|CD444385.1|CD444385
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTEST: gi|71426237|gb|DR807287.1|DR807287
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTEST: gi|31358130|gb|CD442487.1|CD442487
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTEST: gi|211446592|gb|FL094688.1|FL094688
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG ATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACATTTEST: gi|211446590|gb|FL094686.1|FL094686
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATT
EST: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAG ATTGATGGAAAAGCTGCTTTGCTA
genomic: TTGATATGCTCCAGTTCGTCGGAGAGTCACTAAAGATTCTGCGAAATGAGgtagtgctcg ... tatcctctagATTGATGGAAAAGCTGCTTTGCTA
cgttctgccctacactttgatgcttataaatctttttgcctcctctatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTGCAACTTACATTGTTGAAGGGGGGATGACCAACACATACACAAATATAA
ctttgat putative branch site (score: 5)
tctttttgcctcctct putative PPT
ttataaatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctgttttattgataccaattgtatgggtatagttcagcaaagcgttctgccctacactttgatgcttataaatctttttgcctcctctatcctctagATTGATGGAAAAGCTGCTTTGCTAGGATTTGTGGGGGCCCCATGGACAATTGCAACTTACATTGTTGAAGGGGGGATGACCAACACATACACAAATATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG