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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattgtcttatttctttggtagaagctgaatgttatacactgaacttattgctcatgtttctctttcttttttgctacaaatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTACATGGTGTGGAAACCGCTTTGCCACGGTTGCCATGGTAACTCCAAGGAC

Basic information

species Zea mays
transcript GRMZM2G376074_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G376074_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g09260.1 (Oryza sativa), 3'ss of exon 2
----gtatgcattgtcttatttctttggtagaagctg----aatgttatacactgaactta--------ttgctcatgtttctc------tttcttttttgctacaaatttcgt-----------agGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTACATGGTGTGGAAACCGCTTTGCCACGGTTGCCATGGTAACTCCAAGGAC
    || ||||||| ||| |  | ||||   ||||||     || | |||  ||   |||          |||   || ||         ||| |||||||  | ||| || ||           |||||||||||||||||||| |  ||| ||||| |||||||    || ||||| ||||||||||||||  |||| || ||||||||||| ||||||||||||
gtatgtctgcattgccttgtcgccttggccaaagctgtggagatttgatatgctagtcttgaggtgccgctgcctttgcttgctgatgatttttttttttgaaaaaaaattggtgtctgctatgcagGAAGATACATTCCACTGGAGCAATCACAAAAGGCGATATTAAACAACTTTATATGGTGTGGAAACCTGTTTGTCATGGTTGCCATGGGAACTCCAAGGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76284353|gb|DV023921.1|DV023921
EST:     AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAA                         GAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
genomic: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattg ... aatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
EST: gi|32935081|gb|CF039893.1|CF039893
EST:     AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAA                         GAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
genomic: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattg ... aatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
EST: gi|32935045|gb|CF039857.1|CF039857
EST:     AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAA                         GAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
genomic: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattg ... aatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
EST: gi|32934890|gb|CF039702.1|CF039702
EST:     AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAA                         GAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
genomic: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattg ... aatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
EST: gi|76288969|gb|DV028537.1|DV028537
EST:     AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAA                         GAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA
genomic: AAGAGGCCTCGCGCTGATGAATCCAATAGCCCATCTGTGGCTGTTTTCAAgtatgcattg ... aatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacactgaacttattgctcatgtttctctttcttttttgctacaaatttcgtagGAAGATACATTCCACTGGTGATATCTCAAAAAGCGATATCTGTCAGCTTTACATGGTGTGGAAACCGCTTTGCCACGGTTGCCATGGTAACTCCAAGGAC
                             tttctttttt  TA-rich tract