1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtctcttcccttggcattaaaatccttctttgtatctgcattccttcctgctccaaagtacagtaactgatattctatgatttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGTTTTTCTGCTCGCCTTTTCTCTTATCAGCAAAGCAAGCTATGAGAATGT
species | Zea mays |
transcript | GRMZM2G375002_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211164770|gb|FK955409.1|FK955409
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|14242930|gb|BG840265.2|BG840265
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211163177|gb|FK955404.1|FK955404
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTNGGTCTGTGGGATACAGCAG GACAAGAAGATTACRATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211164778|gb|FK955417.1|FK955417
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|32909548|gb|CF014360.1|CF014360
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGEST: gi|211236584|gb|FK955431.1|FK955431
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATATGACTGCGTCCGTTGAGCTATCGTGGTGCTGATEST: gi|211236576|gb|FK955423.1|FK955423
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATA-GACTGCGTCCGTTGAGCTATCGTGGTGCTGAT
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211163178|gb|FK955405.1|FK955405
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211164773|gb|FK955412.1|FK955412
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211163176|gb|FK955403.1|FK955403
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211164772|gb|FK955411.1|FK955411
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211163179|gb|FK955406.1|FK955406
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTAEST: gi|32827834|gb|CD967512.1|CD967512
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTA
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211163175|gb|FK955402.1|FK955402
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|12047201|gb|BF729340.1|BF729340
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|32858427|gb|CD998108.1|CD998108
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTTGCGTCCGTTGEST: gi|32936373|gb|CF041192.1|CF041192
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACT-GCGTCCGTTG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211385329|gb|FL304291.1|FL304291
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|211236582|gb|FK955429.1|FK955429
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGAT-ACAATAGACTGCGEST: gi|211164771|gb|FK955410.1|FK955410
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|31558461|gb|CD527673.1|CD527673
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAG GACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGEST: gi|33467050|gb|CF244099.1|CF244099
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATG
EST: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACCGCAG GACAAGAAGATTACAATAGACTGCGTCC
genomic: TGTTGTGGTTGACGGGAGCACTGTCAACTTGGGTCTGTGGGATACAGCAGgtctcttccc ... atttttttagGACAAGAAGATTACAATAGACTGCGTCC
tctgcattccttcctgctccaaagtacagtaactgatattctatgatttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGTTTTTCTGCTCGCCTTTTCTCTTATCAGCAAAGCAAGCTATGAGAATGT
ttttttt CT-rich tract
tgatattctatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcttcccttggcattaaaatccttctttgtatctgcattccttcctgctccaaagtacagtaactgatattctatgatttttttagGACAAGAAGATTACAATAGACTGCGTCCGTTGAGCTATCGTGGTGCTGATGTTTTTCTGCTCGCCTTTTCTCTTATCAGCAAAGCAAGCTATGAGAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT