Sequence
atgc intronic sequence ATGC exonic sequence...taaactaagaataatacgattatgcaaagatgctaactacaatgattctttaagaacaaattatttcaagttctgacatctttctttttgtcacttacagGTTCTGATATATTCGCCAGACGGAAGGTGCTTGTTCAAGTATCTAGCTTATGAAAGTGGGTTGGGTGTGAAAACTGTTGCTTGGTCACCATGTGGACAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G374969_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g41370.1 (Oryza sativa), 3'ss of exon 2
---taaactaagaataatacgattatgcaaagatgctaactacaatgattctttaagaacaaattatttcaagttctgacatctttctttttgtcacttacagGTTCTGATATATTCGCCAGACGGAAGGTGCTTGTTCAAGTATCTAGCTTATGAAAGTGGGTTGGGTGTGAAAACTGTTGCTTGGTCACCATGTGGACAGT
| | | |||| | | | | || || || | ||| | | || || | | || || | |||||||||||||||||| || || || |||||| |||||||||| |||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||
gggttcatctcaacggatactaatctcttgttctactc-ttatgttg--ttgttagcagtttttggatttaaactgataatcctaagaacatgattgtcacagGTTCTGATATATTCACCGGATGGGAGGTGCCTGTTCAAGTACTTAGCATATGAAAGTGGATTAGGTGTGAAAACTGTTGCGTGGTCACCATGTGGACAGT
upper sequence: GRMZM2G374969_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA20G33770.1 (Glycine max), 3'ss of exon 2
-taaactaagaataatacgattatgcaaagatgctaactacaat-gattctttaagaacaaattatttcaagttctgacatctttctttttgtcacttacagGTTCTGATATATTCGCCAGACGGAAGGTGCTTGTTCAAGTATCTAGCTTATGAAAGTGGGTTGGGTGTGAAAACTGTTGCTTGGTCACCATGTGGACAGT
| | | || | || | | | | | || || | | |||| | | ||| | || | | ||| ||| || ||||||| |||||||| ||||||||||||||| | |||||||||| ||| ||||||||||| || || || |||| ||| | ||||| || ||||| ||||
gttgcttttgtattactcgctggt--tatgctataaattattgttggaaatttatgctgtatttacaattgcctaaaacttagtcatttatgtttgatatagGTTCTAATATATTCTCCAGACGGAAGGTGCCTTTTCAAGTATCAAGCATATGAAAGTGGATTAGGAGTTAAAAGTGTGTCCTGGTCTCCTTGTGGTCAGT
upper sequence: GRMZM2G374969_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA10G33830.1 (Glycine max), 3'ss of exon 2
-taaactaagaataatacg---attatgcaaaga--tgctaactacaatg-attctttaagaacaaattatttcaagttctgacatctttctttttgtcacttacagGTTCTGATATATTCGCCAGACGGAAGGTGCTTGTTCAAGTATCTAGCTTATGAAAGTGGGTTGGGTGTGAAAACTGTTGCTTGGTCACCATGTGGACAGT
| | | |||| || |||||| | | | | || ||| || || || ||| ||| | || | | ||| | | ||| || ||||||| |||||||| ||||||||||||||| | |||||||||| ||| ||||||||||| || || | |||| ||| | ||||| || ||||| ||||
gttgcttttgtataactcgctggttatgctataaattattgtctgaaatttatgctgtatttgcaa-ttacctaaaacttagtcatttatgttt------gatatagGTTCTAATATATTCTCCAGACGGAAGGTGCCTTTTCAAGTATCAAGCATATGAAAGTGGATTAGGGATTAAAAGTGTGTCCTGGTCTCCTTGTGGTCAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctttaagaacaaattatttcaagttctgacatctttctttttgtcacttacagGTTCTGATATATTCGCCAGACGGAAGGTGCTTGTTCAAGTATCTAGCTTATGAAAGTGGGTTGGGTGTGAAAACTGTTGCTTGGTCACCATGTGGACAGT
ttctgac putative branch site (score: 2)
tctttctttttgtcac CT-rich tract
taagaacaaattattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaactaagaataatacgattatgcaaagatgctaactacaatgattctttaagaacaaattatttcaagttctgacatctttctttttgtcacttacagGTTCTGATATATTCGCCAGACGGAAGGTGCTTGTTCAAGTATCTAGCTTATGAAAGTGGGTTGGGTGTGAAAACTGTTGCTTGGTCACCATGTGGACAGT
-aaactaa
- - - - - - - - - -ttatgca
- - - - - - - - - - - - - - gatgcta
- - - - - - - - - - - - - - - - - - - - - tgattct
- - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaa