1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatctgattcattttgagcaacaaaagtagttactaagaaaggtccatagagtttgcgcggtgaaggtttcttaactgatatgctttgtgctgtcttcagGAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAG
species | Zea mays |
transcript | GRMZM2G368908_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTGTCCATGTTCCTTCAGAAATTGCTGCTCATGAAGTTGAGGAAATTG GAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGEST: gi|60355241|gb|DN222214.1|DN222214
genomic: ATTTGTCCATGTTCCTTCAGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtaagacttg ... ctgtcttcagGAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTG
EST: ATTTGTCCATGTTCCTTCAGAAATTGCTGCTCATGAAGTTGAGGAAATTG GAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGEST: gi|108824177|gb|EC278185.1|EC278185
genomic: ATTTGTCCATGTTCCTTCAGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtaagacttg ... ctgtcttcagGAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTG
EST: ATTTGTCCATGTTCCTTCAGAAATTGCTGCTCATGAAGTTGAGGAAATTG GAGTTGAACACCTTTTAAGGGATGTAAAGGACACAACCATAAGCACACTTGEST: gi|110520623|gb|EE024807.1|EE024807
genomic: ATTTGTCCATGTTCCTTCAGAAATTGCTGCTCATGAAGTTGAGGAAATTGgtaagacttg ... ctgtcttcagGAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTG
EST: AAATTGCTGCTCATGAAGTTGAGGAAATTG GAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTG
genomic: AAATTGCTGCTCATGAAGTTGAGGAAATTGgtaagacttg ... ctgtcttcagGAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTG
catagagtttgcgcggtgaaggtttcttaactgatatgctttgtgctgtcttcagGAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAG
ctgtcttc CT-rich tract
tttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctgattcattttgagcaacaaaagtagttactaagaaaggtccatagagtttgcgcggtgaaggtttcttaactgatatgctttgtgctgtcttcagGAGTTGAACACCTTTTAAGGGACGTAAAGGACACAACCATAAGCACACTTGCTACAGAG
- - tgattca
- - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - -ctaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctt