Sequence
atgc intronic sequence ATGC exonic sequence...cgcgacagccctaccgtccgacacgatgattcttgtgcactgtactgtactgtactaactccccccaccccctccggtatgtaacgcatgccatatgcagGCGCTGTCCAACGGGCGGTACAAGAGCTGCCTGCACCGCGCGGTGGTGAACCGGCGGCAGGAGCGGCAATCGCTGGCCTTCTTCCTGTGCCCGCGCGAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G368411_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g66100.1 (Oryza sativa), 3'ss of exon 2
cgcgacagccctaccgtccgacacgatgattcttg-tgcactgtactgtactgtac-taactccccccaccccctccggtatgtaacgcatg---ccatatgcagGCGCTGTCCAACGGGCGGTACAAGAGCTGCCTGCACCGCGCGGTGGTGAACCGGCGGCAGGAGCGGCAATCGCTGGCCTTCTTCCTGTGCCCGCGCGAGG
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---tgtagccctgc-acgtgtcggcctctccgttgatgaatgatgatgta-tgtatgtatttttttttgtctgaaggaatttgtggggaattgttgtgtgtgcagGCGCTGTCGAACGGGAGGTATAAGAGCTGCCTGCACAGGGCGGTGGTGAACCAGCGGCGGGAGCGGCGGTCGCTGGCGTTCTTCCTGTGCCCGCGGGAGG
upper sequence: GRMZM2G368411_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT4G25420.1 (Arabidopsis thaliana), 3'ss of exon 2
-cgcgacagccctaccgtccgacacgatgattcttgtgcac---tgtactgtactgtactaactccccccaccccctccggtatgtaacgcatgccatatgcagGCGCTGTCCAACGGGCGGTACAAGAGCTGCCTGCACCGCGCGGTGGTGAACCGGCGGCAGGAGCGGCAATCGCTGGCCTTCTTCCTGTGCCCGCGCGAGG
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gtaacccatttagatttttaaaaacctcacatcttggttagatatatacagcctttggctaggtacctccatatactaaactgggcttaatat-tgttttgtagGCTCTATCGAACGATAGATACAAGAGCTGCTTGCACCGGGCGGTGGTGAACAGCGAGAGCGAGAGGAAATCACTTGCATTCTTCTTGTGTCCGAAAAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71773743|gb|DR971639.1|DR971639EST: TCCGGCCCGTCCCAGGCGCCATGGTCATCAACATCGGCGACACCTTCATG GCGCTGTCCAACGGGCGGTACAAGAGCTGCCTGCACCGCGCGGTGGTGAAC
genomic: TCCGGCCCGTCCCAGGCGCCATGGTCATCAACATCGGCGACACCTTCATGgtaacgaacg ... ccatatgcagGCGCTGTCCAACGGGCGGTACAAGAGCTGCCTGCACCGCGCGGTGGTGAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtactgtactaactccccccaccccctccggtatgtaacgcatgccatatgcagGCGCTGTCCAACGGGCGGTACAAGAGCTGCCTGCACCGCGCGGTGGTGAACCGGCGGCAGGAGCGGCAATCGCTGGCCTTCTTCCTGTGCCCGCGCGAGG
tatgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cgcgacagccctaccgtccgacacgatgattcttgtgcactgtactgtactgtactaactccccccaccccctccggtatgtaacgcatgccatatgcagGCGCTGTCCAACGGGCGGTACAAGAGCTGCCTGCACCGCGCGGTGGTGAACCGGCGGCAGGAGCGGCAATCGCTGGCCTTCTTCCTGTGCCCGCGCGAGG
- - - - - - - - - - - - - - - -cttgtgc
- - - - - - - - - - - - - - - - - - - - tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgcatg