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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaccaatagctggtccatttcttagtatctagggaactatattcctaatggccaacatcctatcatttcttacatatctttatggtgcttttgtagGGTTGTTCACACACTCAGCCATAACTTCCGGAATGCTACAAGGCTTGAGCGTGTGCGCCTGAGATTACCCATTGAACCGCACAACACTCTAGTTAAAATT

Basic information

species Zea mays
transcript GRMZM2G368058_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G368058_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os09g28570.3 (Oryza sativa), 3'ss of exon 7
----gtacaccaatagctggtccatttct--tagtatctagggaactatattcctaatggccaacatcctatcatttcttacatatctttatggtgcttttgtagGGTTGTTCACACACTCAGCCATAACTTCCGGAATGCTACAAGGCTTGAGCGTGTGCGCCTGAGATTACCCATTGAACCGCACAACACTCTAGTTAAAATT
      | ||| || |  | |    | |    | | | |    ||  ||||||  |||||     ||    | |||  | |  | | | | || |  |  || || |||||||||||||| |||||||| || ||  |||||||||| ||||| ||||||||| ||||||| ||  ||||||| |||||  |||| || ||||| 
cctccgatacctatggtagtttttatgccagcaatttttttacaagaatattcaaaatgga----atttatttattaatgatctgtttct-tgattatcatgcagAGTTGTTCACACACTTAGCCATAATTTTCGCGATGCTACAAGACTTGAACGTGTGCGCTTGAGATTGCCGGTTGAACCACACAATGCTCTGGTCAAAATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctaatggccaacatcctatcatttcttacatatctttatggtgcttttgtagGGTTGTTCACACACTCAGCCATAACTTCCGGAATGCTACAAGGCTTGAGCGTGTGCGCCTGAGATTACCCATTGAACCGCACAACACTCTAGTTAAAATT
                         ttcttac  putative branch site (score: 2)
                                            tgctttt  putative PPT
                            ttacatatctttat  TA-rich tract