Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211082677|gb|FK957165.1|FK957165EST: ACGAGTACGAGCTCGTCGTCACCACCTACTCAG GTCTGTABCGCTACCGCGTGGGCGACGTGCTGCGCGTGGCCGGGTTCAAGA
genomic: ACGAGTACGAGCTCGTCGTCACCACCTACTCAGgtgcgggtgc ... gcaactgcagGTCTGTACCGCTACCGCGTGGGCGACGTGCTGCGCGTGGCCGGGTTCAAGA
EST:
gi|28931354|gb|CB334715.1|CB334715EST: CGACGTCAAGCTCGGGCACGAGTACGAGCTCGTCGTCACCACCTACTCAG GTCTGTACCGCTACCGCGTGGGCGACGTGCTGCGCGTGGCCGGGTTCAAGA
genomic: CGACGTCAAGCTCGGGCACGAGTACGAGCTCGTCGTCACCACCTACTCAGgtgcgggtgc ... gcaactgcagGTCTGTACCGCTACCGCGTGGGCGACGTGCTGCGCGTGGCCGGGTTCAAGA
EST:
gi|6022482|gb|AW067515.1|AW067515EST: CGACGTCAAGCTCGGGCACGAGTACGAGCTCGTCGTCACCACCTACTCAG GTCTGTACCGCTACCGCGTGGGCGACGTGCTGCGCGTGGCCGGGTTCAAGA
genomic: CGACGTCAAGCTCGGGCACGAGTACGAGCTCGTCGTCACCACCTACTCAGgtgcgggtgc ... gcaactgcagGTCTGTACCGCTACCGCGTGGGCGACGTGCTGCGCGTGGCCGGGTTCAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgacactagctagctagctaacgaacgtacacgcacgcacgccgtgcaactgcagGTCTGTACCGCTACCGCGTGGGCGACGTGCTGCGCGTGGCCGGGTTCAAGAACCAGGCGCCCATGTTCAAGTTCCTGCGGCGGAAGAACGTGGTGCTGAG
agctaac putative branch site (score: 2)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcgggtgcgggtgatgaaatggaacagctgctagctgatgagtcagtgacactagctagctagctaacgaacgtacacgcacgcacgccgtgcaactgcagGTCTGTACCGCTACCGCGTGGGCGACGTGCTGCGCGTGGCCGGGTTCAAGAACCAGGCGCCCATGTTCAAGTTCCTGCGGCGGAAGAACGTGGTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC