1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atatttatctaattttggttgaattaaaattgtgtgtctgcaaatggctaaatatatatcataatctgatgtttgatattttcattggaatgatatatagGTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGCATCGGGGCTTACAGTCGACCACCCGATAATGACGACTACTGACTTCTGG
species | Zea mays |
transcript | GRMZM2G365160_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCACTCAGTGGAACCTCGATTTCATGGATCACAACGAGCAAGGTGATAG GTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGCEST: gi|149084700|gb|EE174190.2|EE174190
genomic: GTCACTCAGTGGAACCTCGATTTCATGGATCACAACGAGCAAGGTGATAGgtgagaaaat ... tgatatatagGTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGC
EST: GTCACTCAGTGGAACCTCGATTTCATGGATCACAACGAGCAAGGTGATAG GTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGCEST: gi|32863018|gb|CF002700.1|CF002700
genomic: GTCACTCAGTGGAACCTCGATTTCATGGATCACAACGAGCAAGGTGATAGgtgagaaaat ... tgatatatagGTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGC
EST: GTCACTCAGTGGAACCTCGATTTCATGGATCACAACGAGCAAGGTGATAG GTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGCEST: gi|211374266|gb|FK948456.1|FK948456
genomic: GTCACTCAGTGGAACCTCGATTTCATGGATCACAACGAGCAAGGTGATAGgtgagaaaat ... tgatatatagGTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGC
EST: -TCACTCAGTGGAACCTCGATTTCATGGATCACAACGAGCAAGGTGATAG GTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGCEST: gi|211371613|gb|FK948452.1|FK948452
genomic: GTCACTCAGTGGAACCTCGATTTCATGGATCACAACGAGCAAGGTGATAGgtgagaaaat ... tgatatatagGTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGC
EST: -TCACTCAGTGGAACCTCGATTTCATGGATCACAACGAGCAAGGTGATAG GTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGC
genomic: GTCACTCAGTGGAACCTCGATTTCATGGATCACAACGAGCAAGGTGATAGgtgagaaaat ... tgatatatagGTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGC
ggctaaatatatatcataatctgatgtttgatattttcattggaatgatatatagGTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGCATCGGGGCTTACAGTCGACCACCCGATAATGACGACTACTGACTTCTGG
aatatatatcataatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatttatctaattttggttgaattaaaattgtgtgtctgcaaatggctaaatatatatcataatctgatgtttgatattttcattggaatgatatatagGTACCGTGAATTGGCCCATAGGGTGGATGATGCTCTTGGGTTCATGACTGCATCGGGGCTTACAGTCGACCACCCGATAATGACGACTACTGACTTCTGG
- - - - - - - ttggttg
- - - - - - - - - - - - - - - - - -gtctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt