Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|113813271|gb|DW929554.1|DW929554EST: GTCAAGTGTGCCCTCTTG ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: GTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST:
gi|33285606|gb|CF075401.1|CF075401EST: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
EST:
gi|211305108|gb|FL162113.1|FL162113EST: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTG ACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
genomic: CTTCCACTGTATCAGCCGTTGGCTAAAGACCCGTCAAGTGTGCCCTCTTGgtcggtagcc ... gacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttactcattcccgtccacaccgcctcaccttctaatttgtaatttgacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGTGGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT
ttctaatttgtaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcggtagccctggcatttctgcctcttgatcaatgtgattgttttttgttactcattcccgtccacaccgcctcaccttctaatttgtaatttgacactgcagACAACAGTGAGTGGGAGTTCCAGAAGTATGGTCACTAGAGAGAATGGCTTCGGCGTGGAGTTGCTTCATCGTTTCTCGTCGTTTAGCAGTAGTGGTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG