Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcacgccgcccctcgttcttccttccccttctatttgttctggttttgtgctttgatctaacctcgcttgttgtggcggtccgcgtctgtctgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG

Basic information

species Zea mays
transcript GRMZM2G361074_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361074_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g47870.1 (Oryza sativa), 3'ss of exon 2
gtgagcacgc-cgcccctcgttcttccttcccctt------------ctatttgttctggttttgtgctttgatctaacctcg---------cttgttgtggc---ggtccgcgtctgtctgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG
|||||||||| |||| || |   | |  || ||              || ||  ||  | || |  | |||  ||| | || |         |||||  || |   ||| |||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
gtgagcacgcgcgccgctggccttccgctcgcccccgctccgatctgctgttcctttagattctagggtttcttcttagcttgttggtatggcttgtgatgacgcgggtgcgcgtgcgtgtgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG

upper sequence: GRMZM2G361074_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G32060.3 (Glycine max), 3'ss of exon 2
gtgagcacgccgcccctcgttcttccttccccttctatttgttctggttttgtgctttgatctaacctcgcttgttgtggcggtccgcgtctgtctgttg-tgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG
|| |||  |      |   || ||         ||| | |||| ||  ||   | |||  |||||          |    || |  | || ||  |  || | |||| || ||||||||||| |||||||| |||||||| |||||||| ||||| || |||||||
gtaagcgtgttaattcaacttattg--------tctgtgtgttgtgagttatcgtttt--tctaagagaataacctaattcgatttgagtttgattactggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGG

upper sequence: GRMZM2G361074_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G32060.2 (Glycine max), 3'ss of exon 2
gtgagcacgccgcccctcgttcttccttccccttctatttgttctggttttgtgctttgatctaacctcgcttgttgtggcggtccgcgtctgtctgttg-tgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG----------------------------------------
|| |||  |      |   || ||         ||| | |||| ||  ||   | |||  |||||          |    || |  | || ||  |  || | |||| || ||||||||||| |||||||| |||||||| |||||||| ||||| || |||||||                                        
gtaagcgtgttaattcaacttattg--------tctgtgtgttgtgagttatcgtttt--tctaagagaataacctaattcgatttgagtttgattactggtttagGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGGTACGCTCTGAAGCCCTTTAATATTCTCCTGTTAAATGCG

upper sequence: GRMZM2G361074_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ06425 (Selaginella moellendorffii), 3'ss of exon 1
gtgagcacgccgcc--cctcgt------tcttccttccccttctatttgttctggttttgtgctttgatctaacctcgcttgttgtggcggtccgcgtctgtctgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG
|| ||      |    | | ||      |  ||  || |   || ||| | | |   ||||| |       |||  |||   |||  | |   | | ||     | | |||  |||||||||||||||| |||||||| |||||||| ||||| || |||||           
gtaaggggattgtttgcattgtgagagattatcgatcgcgccctctttctccagACATTGTGGT---GGACAACTGCGCGATTTGCCG-GAATCACATCA--TGGATCTGT--GCATCGAGTGCCAGGCAAACCAGGCCAGCGCCACGAGCGAAGAATGCAC-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211305107|gb|FL162112.1|FL162112
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|71426824|gb|DR807874.1|DR807874
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307131|gb|FL162129.1|FL162129
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|78085341|gb|DV513734.1|DV513734
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|148950950|gb|EC896587.2|EC896587
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307122|gb|FL162120.1|FL162120
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211196752|gb|FL162102.1|FL162102
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|84979967|gb|DW530316.1|DW530316
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|33770787|gb|CF273081.1|CF273081
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|28187952|gb|CB179562.1|CB179562
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305102|gb|FL162107.1|FL162107
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211309155|gb|FL162139.1|FL162139
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|37621951|gb|CF675004.1|CF675004
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|116823511|gb|EC867051.1|EC867051
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307127|gb|FL162125.1|FL162125
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305104|gb|FL162109.1|FL162109
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305105|gb|FL162110.1|FL162110
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307126|gb|FL162124.1|FL162124
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|76294370|gb|DV033938.1|DV033938
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307136|gb|FL162134.1|FL162134
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|28188123|gb|CB179733.1|CB179733
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|71426825|gb|DR807875.1|DR807875
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|32912934|gb|CF017746.1|CF017746
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307124|gb|FL162122.1|FL162122
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|149085569|gb|EE175081.2|EE175081
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|78081690|gb|DV510102.1|DV510102
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211309154|gb|FL162138.1|FL162138
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305110|gb|FL162115.1|FL162115
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305106|gb|FL162111.1|FL162111
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307132|gb|FL162130.1|FL162130
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305100|gb|FL162105.1|FL162105
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211309153|gb|FL162137.1|FL162137
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211196753|gb|FL162103.1|FL162103
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|76908744|gb|DV163077.1|DV163077
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|37622025|gb|CF675078.1|CF675078
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|28187964|gb|CB179574.1|CB179574
EST:     CATCGTGGTGGACAGCTGCGCCATCTGCCGCGACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305109|gb|FL162114.1|FL162114
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307128|gb|FL162126.1|FL162126
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307135|gb|FL162133.1|FL162133
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305101|gb|FL162106.1|FL162106
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATTGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|28188239|gb|CB179849.1|CB179849
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|149085568|gb|EE175080.2|EE175080
EST:     CGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307123|gb|FL162121.1|FL162121
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTKCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|32915004|gb|CF019816.1|CF019816
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|101389549|gb|EB816709.1|EB816709
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211309151|gb|FL162135.1|FL162135
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|60395946|gb|DN228816.1|DN228816
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|4827489|gb|AI668181.1|AI668181
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305113|gb|FL162118.1|FL162118
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307133|gb|FL162131.1|FL162131
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|9952798|gb|BE639381.1|BE639381
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211307129|gb|FL162127.1|FL162127
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|78026763|gb|DV495150.1|DV495150
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305114|gb|FL162119.1|FL162119
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305112|gb|FL162117.1|FL162117
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211309152|gb|FL162136.1|FL162136
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|37375689|gb|CF624299.1|CF624299
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
EST: gi|211305111|gb|FL162116.1|FL162116
EST:     CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT                         GCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG
genomic: CATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 228

ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 92

ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 101

ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 172

ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTTgtgagcacgc ... tgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgctttgatctaacctcgcttgttgtggcggtccgcgtctgtctgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG
         atctaac  putative branch site (score: 172)
                                       tctgtct  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcacgccgcccctcgttcttccttccccttctatttgttctggttttgtgctttgatctaacctcgcttgttgtggcggtccgcgtctgtctgttgtgtagGCATCGAGTGCCAGGCGAACCAGGCGAGCGCCACCAGCGAGGAGTGCACCGTCGCTTGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG