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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctctttccagatcacaatttaattatttaattttttgtttattttttatcatttaaagATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGG

Basic information

species Zea mays
transcript GRMZM2G359599_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G359599_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 3'ss of exon 1
----------------------------------------gttctctttccagatcacaatttaattatttaattttttgtttattttttatcatttaaagATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGG
                                        ||| | | |     | | ||   || ||  | ||||  |||||  ||| |    | | |||||  |||| |||| || |||  |||| || || |||||||||||||| |||||||| |||||  | || || || ||||| ||||||||||| |||||| 
ctaaagtacatatgcaatcagaaacaattgttatgcttcagttttgtctttct-ttataacacaagtaactcatttgatgtttcctttcttcattctgaagATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATCACAAGTTGGCCTTACGTCTTCATCCAGACAAGAATCCTGGAGATGAG-

upper sequence: GRMZM2G359599_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA19G32480.1 (Glycine max), 3'ss of exon 1
-----------------------------------------------------------------gttctctttccagatcacaatttaattatttaatt-ttttgttta----ttttttatcatttaaagATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGG
                                                                  |||  ||  |   |    | |    ||| | ||   |||||||     |  || |    ||  || |||| || || | ||  ||  | ||||| || |||||||||||||||||  |||| |||||  |||| || ||||| |||||||| ||||| ||||| |
gtaccctaaaaaattcatgctttttctttcgctttcctttgataatggattatttcactattcaaattcaattcgcgtgttgttactgtgatatattatgactttgtttgacggtggttgagtggttgtagGTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccagatcacaatttaattatttaattttttgtttattttttatcatttaaagATTCTAGGAGTTGGGAAGACCACTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGG
                     atttaat  putative branch site (score: 4)
                                      ttttttatc  putative PPT
            aatttaattatttaat  TA-rich tract