Sequence
atgc intronic sequence ATGC exonic sequence...atcgatattttatattcttgccatctgtgacctttactatgcaccatacgttcgcactaacgtaagcttctgttcatttggtctgggactgaattcgaagGTGTCATGTGATGGAGGTGGAGTCCTTTGAGAATGAGGAAGTGGCAAAGTTGCTGAATGATTGGTTTGTTAGCATCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G358618_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA03G36910.1 (Glycine max), 3'ss of exon 3
atcgatattttatattcttgccatctgtgacctttactatgcaccatacgttcgcactaacgtaagcttctgttcatttggt-ctgggactgaattcg-aagGTGTCATGTGATGGAGGTGGAGTCCTTTGAGAATGAGGAAGTGGCAAAGTTGCTGAATGATTGGTTTGTTAGCATCAAG
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--gtatgtgcattatgtttg--actcacaactcgtattgttttggatgagttt----caacgt---tttcggaatctcaagtgtttgtactttgttcgtaagGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTCGTTAGCATTAAG
upper sequence: GRMZM2G358618_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA19G39560.1 (Glycine max), 3'ss of exon 3
atcgatattttatattcttgccatctgtgacctttactatgcaccatacgttcgcactaacgtaagcttctgttcatttggtctgggactgaattcgaagGTGTCATGTGATGGAGGTGGAGTCCTTTGAGAATGAGGAAGTGGCAAAGTTGCTGAATGATTGGTTTGTTAGCATCAAG
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-------------gtacgt-ctatgtgtgtgattcacaactc-ctattgttttggatgagtttcaacgttttcggaatc--tcaagtgtttattgctaagGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTTGTTAGCATTAAG
upper sequence: GRMZM2G358618_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 3
atcgatattttatattcttgccatctg--tgacctttactatgcaccatacgttcgcactaacg-taagcttctgttcat--ttggtctgggactgaattcga-----agGTGTCATGTGATGGAGGTGGAGTCCTTTGAGAATGAGGAAGTGGCAAAGTTGCTGAATGATTGGTTTGTTAGCATCAAG
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gtaagaatttttgctccatgtgaattgcttagttttggttttttgttttttggtcttttaaactctgtgcagcatttcatggtgagtgatgggtggaaaccattggttagGTGTCATGTGATGGAGGTGGAGTCTTTTGAGAATGAAGGGGTTGCAAAATTGCTCAATGATTGGTTTGTTAGTATTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atacgttcgcactaacgtaagcttctgttcatttggtctgggactgaattcgaagGTGTCATGTGATGGAGGTGGAGTCCTTTGAGAATGAGGAAGTGGCAAAGTTGCTGAATGATTGGTTTGTTAGCATCAAG
cactaac putative branch site (score: 1)
ttcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcgatattttatattcttgccatctgtgacctttactatgcaccatacgttcgcactaacgtaagcttctgttcatttggtctgggactgaattcgaagGTGTCATGTGATGGAGGTGGAGTCCTTTGAGAATGAGGAAGTGGCAAAGTTGCTGAATGATTGGTTTGTTAGCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - ttcttgc
- - - - - - - - - - - - - - - - - - -tatgcac